YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIDC_PSEP1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.48
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKRTILIA ALAVVSYVMV LKWNDDYGQA ALPTQNTAAS TVAPGLPDGV PAGNNGASAD  60
   61 VPSANAESSP AELAPVALSK DLIRVKTDVL ELAIDPVGGD IVQLNLPKYP RRQDHPNIPF 120
  121 QLFDNGGERV YLAQSGLTGT DGPDARASGR PLYAAEQKSY QLADGQEQLV VDLKFSDNGV 180
  181 NYIKRFSFKR GEYDLNVSYL IDNQSGQAWS GNMFAQLKRD ASGDPSSSTA TGTATYLGAA 240
  241 LWTASEPYKK VSMKDIDKGS LKENVSGGWV AWLQHYFVTA WIPAKSDNNV VQTRKDSQGN 300
  301 YIIGYTGPVI SVPAGGKVET SALLYAGPKI QSKLKELSPG LELTVDYGFL WFIAQPIFWL 360
  361 LQHIHSLLGN WGWSIIVLTM LIKGLFFPLS AASYRSMARM RAVAPKLAAL KERFGDDRQK 420
  421 MSQAMMELYK KEKINPLGGC LPILVQMPVF LALYWVLLES VEMRQAPWIL WITDLSIKDP 480
  481 FFILPIIMGA TMFIQQRLNP TPPDPMQAKV MKMMPIIFTF FFLWFPAGLV LYWVVNNCLS 540
  541 ISQQWYITRR IEAATKKAAA

Type	Start	End	Confidence
Signal Peptide	1	20	0.47
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	370	0.58
Transmembrane Helix	371	392	0.90
Cytoplasmic	393	433	0.96
Transmembrane Helix	434	458	0.88
Non-Cytoplasmic	459	475	0.92
Transmembrane Helix	476	495	0.89
Cytoplasmic	496	514	0.86
Transmembrane Helix	515	535	0.95
Non-Cytoplasmic	536	560	0.96