YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82735749, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWLADPTAW LGLLTLIVLE LVLGIDNLVF IAILADKLPP HQRDRARVIG LSLALIMRLG  60
   61 LLASISWMVT LTAPLFEVFG KSFSGRDLIM LFGGVFLLFK ATMELHERLE GHVTQASGTL 120
  121 RHAAFWPIVA QIVVLDAVFS LDAVITAVGM VDELSVMMIA VIFSIGIMIV ASKPLTRFVN 180
  181 AHPTVIMLCL GFLMMIGFSL TAEGLGFHIP KGYLYAAIGF SILIELFNQL ARARRKRSLQ 240
  241 QHKPLRERTA HAVLRLLGGR RVEADEVGEE IADLVEGGGE QVLFDRRERV MISGVLNLAE 300
  301 RPIRTVMTAR AEVDVIDLAQ PADAIAQALA NSPYSRLPLI RDGRVDEPLG FVHKKELLKE 360
  361 LLSGSQPDLE NMARAPLNLL ESFSILNALE QMRGQSTHIA FVVNEFGDFT GLLTMTDILE 420
  421 SIAGELPDAS EVEGPGIVQE GEGFVVSGAL NLSQVQARTG FSARATEDYQ TLAGLVMSLL 480
  481 DRLPMVGDRL AWNGWMLTVE AVEERRVRQV RLTPSGDADA AGA

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.83
Transmembrane Helix	12	34	0.90
Cytoplasmic	35	48	0.91
Transmembrane Helix	49	71	0.85
Non-Cytoplasmic	72	82	0.77
Transmembrane Helix	83	103	0.89
Cytoplasmic	104	122	0.91
Transmembrane Helix	123	145	0.88
Non-Cytoplasmic	146	153	0.72
Transmembrane Helix	154	172	0.93
Cytoplasmic	173	182	0.71
Transmembrane Helix	183	202	0.92
Non-Cytoplasmic	203	211	0.72
Transmembrane Helix	212	231	0.91
Cytoplasmic	232	523	0.98