YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62423336
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.84
Transmembrane Helix	31	51	0.87
Non-Cytoplasmic	52	58	0.61
Transmembrane Helix	59	82	0.87
Cytoplasmic	83	89	0.71
Transmembrane Helix	90	110	0.84
Non-Cytoplasmic	111	116	0.82
Transmembrane Helix	117	139	0.91
Cytoplasmic	140	145	0.79
Transmembrane Helix	146	168	0.89
Non-Cytoplasmic	169	176	0.88
Transmembrane Helix	177	198	0.86
Cytoplasmic	199	205	0.76
Transmembrane Helix	206	225	0.95
Non-Cytoplasmic	226	242	0.87
Transmembrane Helix	243	266	0.87
Cytoplasmic	267	328	0.94
Transmembrane Helix	329	351	0.88
Non-Cytoplasmic	352	357	0.61
Transmembrane Helix	358	378	0.90
Cytoplasmic	379	386	0.83
Transmembrane Helix	387	405	0.95
Non-Cytoplasmic	406	416	0.82
Transmembrane Helix	417	438	0.93
Cytoplasmic	439	531	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSKQAPKG KQAEAARPED ERLPVGTSFA YGLQHVLTMY GGIIAVPLII GKAAGLDGAG  60
   61 VSVLIASCLF VGGLATILQS FGVPFFGSQL PLVQGVSFAG VATMTSILAG GEGLPEVFGA 120
  121 VLVASAIGLI VAPGFALIVK FFPPVVTGTV ITTIGLSLMP VAAGWAMGGN AEAPDYGSGR 180
  181 NILIAVGTLA IVLILSRIPV AAISRLSILL AIVVGTVVCL IFGWADFSQV LDRGVFAFPE 240
  241 PFAFGMPTFS AAAIISMFIV IIVTFAETTA DIIAVGEIVK TKVDSKRISN GLRADMLSSA 300
  301 VSPIFNSFTQ SAFAQNVGLV AITGVKSRFV VTAGGVILVV LGLLPVMGGV VAAIPSPVLG 360
  361 GAGIVLFGTV AASGIRTLSK VEYEGNLNMI LVAVSLAFGI IPVVQPDFYN SFPSWVGIIL 420
  421 HSGISSATLM AVLLNLVFNH IGVRSKDRTE RSVFVAGTGR VIRRDELERL INHEALLAEG 480
  481 DTVKDGKIVD CNGEEVPVVS EQQHEKVVEA IKSGEAQTQD DVRRVIKETE D