YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|242140487, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEPFHAASA GTQHVVLRAS ACLRVACALF VPAVGAALYA CAAPLVGGGG AAALAGLAAA  60
   61 LVALRARAAC VRHQPAALLI DAGAGVLAAF DRDGRRLARG QIAGCTQWSD LLVVLRVQGR 120
  121 GRRVTPLVIP ADAVDAAVFR ALCVLGRRAA RGALAAAWRP RGRPLPVENA HERLERERYN 180
  181 SAPRCFPRLR ICQVSEKEID QVLVERVQNG DKAAFELLVS KYHRKIIRLI SRLVRDPAEV 240
  241 EDVAQDAFIK AYRALPQFRG ESAFYTWLYR IAVNTAKNYL ATQGRRAPTS TDADAEEAET 300
  301 FSDADQLRDI NTPESMLMSK QIAQTVNAAM ALLPEELRTA ITLREIEGLS YEEIAEMMGC 360
  361 PIGTVRSRIF RAREAIAAKL RPLLDTPEGR RW

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	40	0.88
Non-Cytoplasmic	41	45	0.59
Transmembrane Helix	46	66	0.85
Cytoplasmic	67	392	0.66