YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113968762, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDFISLLSH SLAQSPWLFI ALSFVFAATI GSFLNVVIHR FPVMMKREWQ QECNQYLQEY  60
   61 HVDVVKQIGI EKLNKPIDTY PEKYNLVVPG SACPKCKTAI KPWHNLPIVG WLMLRGKCAA 120
  121 CDAPISSRYP IIELVTGLLV ATLAWHFGPS WQFVFAAVLT FVLIALTGID LDEMLLPDQM 180
  181 TLPLLWLGLL INLNHTFTTP TDAVIGAAAG YLSLWSVFWL FKLLTGKEGM GYGDFKLLAV 240
  241 FGAWLGWQML PLVILLSSLV GALVGITLIV LKRNQLANPI PFGPYIAAAG WIALIWGQPI 300
  301 VDWYLSTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.95
Transmembrane Helix	17	38	0.95
Cytoplasmic	39	128	0.96
Transmembrane Helix	129	147	0.61
Non-Cytoplasmic	148	150	0.51
Transmembrane Helix	151	171	0.84
Cytoplasmic	172	186	0.41
Transmembrane Helix	187	221	0.73
Non-Cytoplasmic	222	246	0.63
Transmembrane Helix	247	271	0.87
Cytoplasmic	272	279	0.73
Transmembrane Helix	280	300	0.88
Non-Cytoplasmic	301	308	0.75