YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82496380, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.81
Transmembrane Helix	5	23	0.93
Cytoplasmic	24	29	0.73
Transmembrane Helix	30	49	0.85
Non-Cytoplasmic	50	56	0.78
Transmembrane Helix	57	75	0.94
Cytoplasmic	76	84	0.77
Transmembrane Helix	85	106	0.93
Non-Cytoplasmic	107	113	0.75
Transmembrane Helix	114	133	0.94
Cytoplasmic	134	145	0.91
Transmembrane Helix	146	168	0.88
Non-Cytoplasmic	169	175	0.84
Transmembrane Helix	176	197	0.93
Cytoplasmic	198	213	0.85
Transmembrane Helix	214	233	0.86
Non-Cytoplasmic	234	237	0.56
Transmembrane Helix	238	256	0.84
Cytoplasmic	257	269	0.75
Transmembrane Helix	270	288	0.90
Non-Cytoplasmic	289	294	0.65
Transmembrane Helix	295	314	0.93
Cytoplasmic	315	326	0.73
Transmembrane Helix	327	348	0.90
Non-Cytoplasmic	349	355	0.75
Transmembrane Helix	356	375	0.89
Cytoplasmic	376	648	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHGFLIQIL LMLVIAIIAI ALLRRIGLPA ILAYLLTGVL SGPSGFHWFT QQQMQSVAEL  60
   61 GVVLLMFTLG LEFSVPRLWA MRRTVFGLGS AQVLVTTVLT MLVALACGQN WIESLVIGAA 120
  121 IALSSTAIVL KLLNEQGWLR RRHGELSVSV LLFQDLAVVP LLILLPLLGQ NDEPLMLAAI 180
  181 ALALLKGILA FFLLMALGKW ALPRLFDEVA RSRSNELFVL STLVVALVTG AFTQWLGLSM 240
  241 ALGAFMAGML LGESQYRRQL EADIRPFRDL LMGLFFISIG MMLDFALVIQ FWWQILLILL 300
  301 AVVVGKALII HGLLRLVGEP FRIAISTALS LAQVGEFSFV VLALAVSYGL LSNETSTMLV 360
  361 MVAVLSMSIA PWLVRHSVDI AKWLLGIRQS GHVDEVVPIV TDDHDLVLIL GYGRVGQTIA 420
  421 RFLKTEAVPY LVLDLDPTRV SEARRAGEPI YFGDVCKRAI LKQVGIKHAK MIVITFCETR 480
  481 SLEEALPLCK QLAPDAKILV RTRDDSELDM LQKAGANQVI PESLEGSLML VSQVLHQCGV 540
  541 PLARILKRLE SERRNHYQFL HGFFSGTETD FTLESLHAVL LHRGADAVGK QVADIDWELL 600
  601 RVELRAIRRS GQEIEHPASD WIFRAGDILL IVGKPRRLEK AEAKLLHG