YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82496247, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALFSPPIH NRAGIYRHSF GLLGLFLIGF TPIALQAAPA SGEFVASKRC ELFQSKNKQT  60
   61 NPDNWQSNIG ERYPVAEILG NSANPDWLRV RTNANSSPLR WIKGDCGQYN VAATAPAESI 120
  121 ATAQPTANVE PAQTSLTSES TAVKSEKPQE RSTPEKRQGN VCQIEDNYDS NVLALSWQST 180
  181 FCELYGSRKP ECRALSQNSD APQWQHFSLH GLWPNRQQCG TRYGFCSSVK QQPSDFCDYP 240
  241 EVTLNASVQK NLEEVMPSAR YGSCLERHEW WKHGTCRNQD PNDYFLLATQ LTQEVNASAW 300
  301 VQLFIHERIG KKVTQQELNQ SFDASFGQGA HTKVTLDCAK GLLSEIRINL PQVINNSDSL 360
  361 PSLLAKAPKA KKTNCPATLL IDNPN

Type	Start	End	Confidence
Signal Peptide	1	37	0.72
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	385	0.99