YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82495274, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTQITKNPN TYQSDARFPQ VQDDEIDLRE LFAVIWQGKW LIIAITAVFA IASVAFAILQ  60
   61 PNIYKSEALL APASEEQGGG LSALASQFGG LASLAGVNLG AKGGTDKTQL AIEVLKSRQF 120
  121 TSEFIQKHNI LADLMAAKKW DRDSDKLIYD EDDYVETTNT WVREVKAPFK PEPSMQEAYK 180
  181 EFSKIIAVNK DKETAMVTIS VEHLSPTVAQ QWVTWLIQDI NKVMKDRDVA EAHRSTEFLN 240
  241 KQIALTNVAD IKTVLYKLIE EQAKTIMFAE VRDEYVFKTI DPALAPEEKA KPKRALICVL 300
  301 GTMLGGMLGV MLVLVRHFMR KEGNPLLN

Type	Start	End	Confidence
Cytoplasmic	1	39	0.85
Transmembrane Helix	40	59	0.96
Non-Cytoplasmic	60	79	0.80
Transmembrane Helix	80	101	0.77
Cytoplasmic	102	295	0.95
Transmembrane Helix	296	318	0.91
Non-Cytoplasmic	319	328	0.92