YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|81253646
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAAAAAWDG LAAELGLAAE SFGLVTSGLA GGSGQAWQGA AAAAMVVAAA PYAGWLAAAA  60
   61 ARAGGAAVQA KAVAGAFEAA RAAMVDPVVV AANRSAFVQL VLSNVFGQNA PAIAAAEATY 120
  121 EQMWAADVAA MVGYHGGASA AAAALAPWQQ AVPGLSGLLG GAANAPAAAA QGAAQGLAEL 180
  181 TLNLGVGNIG SLNLGSGNIG GTNVGSGNVG GTNLGSGNYG SLNWGSGNTG TGNAGSGNTG 240
  241 DYNPGSGNFG SGNFGSGNIG SLNVGSGNFG TLNLANGNNG DVNFGGGNTG DFNFGGGNNG 300
  301 TLNFGFGNTG SGNFGFGNTG NNNIGIGLTG DGQIGIGGLN SGTGNIGFGN SGNNNIGFFN 360
  361 SGDGNIGFFN SGDGNTGFGN AGNINTGFWN AGNLNTGFGS AGNGNVGIFD GGNSNSGSFN 420
  421 VGFQNTGFGN SGAGNTGFFN AGDSNTGFAN AGNVNTGFFN GGDINTGGFN GGNVNTGFGS 480
  481 ALTQAGANSG FGNLGTGNSG WGNSDPSGTG NSGFFNTGNG NSGFSNAGPA MLPGFNSGFA 540
  541 NIGSFNAGIA NSGNNLAGIS NSGDDSSGAV NSGSQNSGAF NAGVGLSGFF R

Type	Start	End	Confidence
Cytoplasmic	1	9	0.71
Transmembrane Helix	10	30	0.72
Non-Cytoplasmic	31	38	0.66
Transmembrane Helix	39	59	0.81
Cytoplasmic	60	127	0.65
Transmembrane Helix	128	148	0.62
Non-Cytoplasmic	149	591	0.82