YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79013992, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLEEDLFP STPGKVKIER AGAMNRQLHR CFASTSTMFL WALFLVAMTA SYLSFQSFVD  60
   61 TSSKYFAASW GGLHWERQIR ASAVPRRPPG SAAGAGMSVL VTGAAGFVGT HCSLALRRRG 120
  121 DGVVGVDNFN AYYDPSLKKA RRALLASHGV FVVEGDINDG RLLAKLFDVV PFTHVLHLAA 180
  181 QAGVRYAMEN PASYVHSNVA GLVTLLEACK DADPQPAIVW ASSSSVYGLN DKVPFSERDR 240
  241 TDQPASLYAA TKKAGEEITH TYNHIYGLSI TGLRFFTVYG PWGRPDMAYF SFTRNILQGK 300
  301 PITVYRGKDH VDLARDFTYI DDIVKGCLAS LETAGKSTGT GGKKRGPAPY RIFNLGNTSP 360
  361 VTVPNLVSIL EKHLRVKAKK NVVEMPGNGD VPFTHANISL AREQLGYKPT TNLDVGLKKF 420
  421 VKWYLSYYGY TRGGSKNSRQ

Type	Start	End	Confidence
Cytoplasmic	1	30	0.95
Transmembrane Helix	31	53	0.86
Non-Cytoplasmic	54	91	0.88
Transmembrane Helix	92	112	0.75
Cytoplasmic	113	440	0.65