YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_SALPK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDMHSLLIA AILGVVEGLT EFLPVSSTGH MIIVGHLLGF EGDTAKTFEV VIQLGSILAV  60
   61 VVMFWRQLFG LIGIHFGRPL QREGESKGRL TLIHILLGMI PAVVLGLVFH DTIKSLFNPI 120
  121 NVMYALVVGG LLLIAAECLK PKEPRAPGLD DMTYRQAFMI GCFQCLALWP GFSRSGATIS 180
  181 GGMLMGVSRY AASEFSFLLA VPMMMGATVL DLYKSWSFLT AADIPMFAVG FVTAFVVALI 240
  241 AIKTFLQLIK RISFIPFAIY RFVVAAAVYV VFF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.94
Transmembrane Helix	7	33	0.78
Non-Cytoplasmic	34	49	0.83
Transmembrane Helix	50	69	0.92
Cytoplasmic	70	89	0.85
Transmembrane Helix	90	110	0.95
Non-Cytoplasmic	111	119	0.73
Transmembrane Helix	120	139	0.84
Cytoplasmic	140	156	0.78
Transmembrane Helix	157	173	0.69
Non-Cytoplasmic	174	189	0.52
Transmembrane Helix	190	213	0.71
Cytoplasmic	214	220	0.43
Transmembrane Helix	221	246	0.82
Non-Cytoplasmic	247	251	0.43
Transmembrane Helix	252	272	0.87
Cytoplasmic	273	273	0.48