YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_CAMJR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLYALILG IIEGLTEFLP ISSTGHMILG TTILGIDIDE FWKSFLIIIQ LGSILAVIFV  60
   61 FWRKLFQGLD IWLKLAVGFF PTGVIGLFVA KYLNALFNGW VVVGMLIFGG VVFILIELAH 120
  121 KNKQYRINSL EEISFKQAFC IGIFQSLAMI PGTSRSGASI IGGLLLGFNR KVAAEFSFLL 180
  181 AIPTMIIATA YSIYKEPELL SNANSLIPLG IGFITAFIVA VLVIKFFLKF ISKFDFIPFG 240
  241 IYRIILGFVF FYLYYSGILN AGSEFKL

Type	Start	End	Confidence
Cytoplasmic	1	8	0.81
Transmembrane Helix	9	34	0.72
Non-Cytoplasmic	35	43	0.71
Transmembrane Helix	44	62	0.96
Cytoplasmic	63	70	0.82
Transmembrane Helix	71	90	0.95
Non-Cytoplasmic	91	96	0.70
Transmembrane Helix	97	119	0.89
Cytoplasmic	120	138	0.84
Transmembrane Helix	139	158	0.60
Non-Cytoplasmic	159	171	0.53
Transmembrane Helix	172	194	0.86
Cytoplasmic	195	204	0.56
Transmembrane Helix	205	228	0.89
Non-Cytoplasmic	229	238	0.53
Transmembrane Helix	239	259	0.90
Cytoplasmic	260	267	0.55