YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM55B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAADGERSPL LSEAGDGGAG GNGLAGPGGS ATGPGGGLTP SAPPYGAGKH APPQAFPPFP  60
   61 EGHPAVLPGE DPPPYSPLTS PDSGSAPMIT CRVCQSPINV EGKMHQHVVK CGVCNEATPI 120
  121 KNAPPGKKYV RCPCNCLLIC KVTSQRIACP RPYCKRIINL GPVHPGPLSP EPQPMGVRVI 180
  181 CGHCKNTFLW TEFTDRTLAR CPHCRKVSSI GRRYPRKRCI CCFLLGLLLA VTATGLAFGT 240
  241 WKPAQQYGGI YAAWAFVILL AVLCLGRALY WGCMKVSHPV QNFS

Type	Start	End	Confidence
Cytoplasmic	1	218	0.99
Transmembrane Helix	219	241	0.92
Non-Cytoplasmic	242	249	0.86
Transmembrane Helix	250	271	0.94
Cytoplasmic	272	284	0.97