YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	THIKA_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRLQVVLGH LAGRPESSSA LQAAPCSATF PQASASDVVV VHGRRTPIGR AGRGGFKDTT  60
   61 PDELLSAVLT AVLQDVKLKP ECLGDISVGN VLEPGAGAVM ARIAQFLSGI PETVPLSAVN 120
  121 RQCSSGLQAV ANIAGGIRNG SYDIGMACGV ESMSLSNRGN PGNISSRLLE SDKARDCLIP 180
  181 MGITSENVAE RFGISRQKQD AFALASQQKA ASAQSKGCFR AEIVPVTTTV LDDKGDRKTI 240
  241 TVSQDEGVRP STTMEGLAKL KPAFKDGGST TAGNSSQVSD GAAAVLLARR SKAEELGLPI 300
  301 LGVLRSYAVV GVPPDIMGIG PAYAIPAALQ KAGLTVNDID IFEINEAFAS QALYCVEKLG 360
  361 IPAEKVNPLG GAIALGHPLG CTGARQVVTL LNELKRRGRR AYGVVSMCIG TGMGAAAVFE 420
  421 YPGN

Type	Start	End	Confidence
Signal Peptide	1	23	0.73
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	368	0.83
Transmembrane Helix	369	389	0.44
Cytoplasmic	390	400	0.62
Transmembrane Helix	401	419	0.75
Non-Cytoplasmic	420	424	0.74