YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRENNCTTA DLAWGIPSIT QAWGLWALFG VVTMLLLISL AALLSQWTRG RRRTQEEQGP  60
   61 PSGRSVEEVP LYGNLHYLQT GRLSEESRSE EQDPSSGGLA RGAEEATCYT SLQLRPAQGR 120
  121 IPSSGTPIKY CEVVLDSEPK PQASGPEPEL YASVCAQTRR ARASFPDQAY ANSQPAPS

Type	Start	End	Confidence
Non-Cytoplasmic	1	21	0.86
Transmembrane Helix	22	44	0.94
Cytoplasmic	45	178	0.87