YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SEC62_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERRRHRKR IQEVGEPFKE EKAVAKYLRF NCPTKSTNMM GHRVDYFIAS KAVDCLLDSK  60
   61 WAKAKKGEEA LFTTRESVVD YCNRLLKKQF FHRALKVMKM KPDKDTKKEK EKGKAESGKE 120
  121 EEKKSKKESS KDEKTKKEKE KKKDGEKEEC KKDETPGTPK KKETKRKFKL EPHEDQVFLD 180
  181 GNEVYVWIYD PVHFKTFAMG LVLVIAVIAA TLFPLWPAEM RVGVYYLSVG AGCFVASILL 240
  241 LAVARCILFL IIWLITGGRH HFWFLPNLTA DVGFIDSFRP LYTHEYKGPK ADLKKEEKSE 300
  301 SKKQQKYDSE EKSDSEKKEE EDGKTEATRN SGTEGSGGER HSDTDSDRRE DDRSQHSSGN 360
  361 GNDFEMITKE ELEQQTDEGD CEEDEDEDTE SRPSHEKS

Type	Start	End	Confidence
Cytoplasmic	1	195	0.94
Transmembrane Helix	196	216	0.93
Non-Cytoplasmic	217	226	0.74
Transmembrane Helix	227	255	0.83
Cytoplasmic	256	398	0.91