YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PORIM_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALCARAALL LGALQVLALP GAVAQETYAQ GSPSGNHSVP LLTANVNVTE NTTMQVVSNQ  60
   61 TSQISTVKPS SVLPKNVTAA TVRPATIKVS TPGVSPHVTP SASKSTPKTS ASPNSTQTSA 120
  121 SMTTTAHSSL LTSVTVSATT HPTKGKGSKF DAGSFVGGIV LTLGVLSILY IGCKMYYSRR 180
  181 GIRYRSIDEH DAII

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	154	0.98
Transmembrane Helix	155	173	0.87
Cytoplasmic	174	194	0.79