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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PCDB5_PANTR
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METALAKTPQ KRQVMFLAIL LLLWEAGSEA VRYSIPEETE SGYSVANLAK DLGLGVGELA  60
   61 TRGARMHYKG NKELLQLDIK TGNLLLYEKL DREVICGATE PCILHFQLLL ENPVQFFQTD 120
  121 LQLTDINDHS PEFPEKEMLL KIPESTQPGT VFPLKVAQDF DIGSNAVQNY TISPNSHFHV 180
  181 ATHNRGDGRK YPELVLDKAL DREERPELSL TLTALDGGAP PRSGTTTIRI VVLDNNDNAP 240
  241 EFLQSLYEVQ VPENSPLNSL VVVVSARDLD AGAYGSVAYA LFQGDEVTQP FVIDEKTGEI 300
  301 RLKRALDFEA TPYYNVEIVA TDGGGLSGKC TVAMEVVDVN DNAPELTMST LSSPIPENAP 360
  361 ETVVAVFSVS DPDSGDNGRM ICSIQNDLPF LLKPTLKNFY TLVTQRTLDR ESQAEYNITI 420
  421 TVTDMGTPRL KTEHNITVLV SDVNDNAPAF TQTSYTLFVR ENNSPALQIG SVSATDRDSG 480
  481 TNAQVTYSLL PPQNPHLRLA SLVSINADNG HLFALRSLDY EALQAFEFRV GATDRGSPAL 540
  541 SSEALVRVLV LDANDNSPFV LYPLQNGSAP CTELVPRAAE PGYLVTKVVA VDGDSGQNAW 600
  601 LSYQLLKATE PGLFSMWAHN GEVRTARLLS ERDAAKHRLV VLVKDNGEPP RSATATLHVL 660
  661 LVDGFSQPYL PLPEAAPAQA QADSLTVYLV VALASVSSLF LFSVLLFVAV RLCRRSRAAP 720
  721 VGRCSVPEGP FPGHLVDVSG TGILSQSYQY EVCLTGDSGA GEFKFLKPII PNLLPQGASE 780
  781 EIGKTAAFRN SFGLN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle