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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LPTD_SALPA
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRIPTLLA TMIASALYSH QGLAADLASQ CMLGVPSYDR PLVKGDTNDL PVTINADNAK  60
   61 GNYPDDAVFT GNVDIMQGNS RLQADEVQLH QKQAEGQPEP VRTVDALGNV HYDDNQVILK 120
  121 GPKGWANLNT KDTNVWEGDY QMVGRQGRGK ADLMKQRGEN RYTILENGSF TSCLPGSDTW 180
  181 SVVGSEVIHD REEQVAEIWN ARFKVGPVPI FYSPYLQLPV GDKRRSGFLI PNAKYTTKNY 240
  241 FEFYLPYYWN IAPNMDATIT PHYMHRRGNI MWENEFRYLM QAGAGLMELD YLPSDKVYED 300
  301 EHPKEGDKHR WLFYWQHSGV MDQVWRFNVD YTKVSDSSYF NDFDSKYGSS TDGYATQKFS 360
  361 VGYAVQNFDA TVSTKQFQVF NDQNTSSYSA EPQLDVNYYH NDLGPFDTRI YGQAVHFVNT 420
  421 KDNMPEATRV HLEPTISLPL SNRWGSLNTE AKLMATHYQQ TNLDWYNANN SKKLEDSVNR 480
  481 VMPQFKVDGK LIFERDMAML APGYTQTLEP RVQYLYVPYR DQSGIYNYDS SLLQSDYNGL 540
  541 FRDRTYGGLD RIASANQVTT GVTTRIYDDA AVERFNVSVG QIYYFTESRT GDDNIKWEND 600
  601 DKTGSLVWAG DTYWRISERW GLRSGVQYDT RLDSVATSSS SLEYRRDQDR LVQLNYRYAS 660
  661 PEYIQATLPS YYSTAEQYKN GINQVGAVAS WPIADRWSIV GAYYFDTNSS KPADQMLGLQ 720
  721 YNSCCYAIRV GYERKLNGWD NDKQHAIYDN AIGFNIELRG LSSNYGLGTQ EMLRSNILPY 780
  781 QSSM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle