YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22AI_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	31	0.94
Non-Cytoplasmic	32	44	0.85
Transmembrane Helix	45	66	0.88
Cytoplasmic	67	74	0.82
Transmembrane Helix	75	99	0.81
Non-Cytoplasmic	100	103	0.55
Transmembrane Helix	104	125	0.78
Cytoplasmic	126	139	0.70
Transmembrane Helix	140	160	0.91
Non-Cytoplasmic	161	167	0.70
Transmembrane Helix	168	188	0.94
Cytoplasmic	189	222	0.93
Transmembrane Helix	223	244	0.93
Non-Cytoplasmic	245	255	0.77
Transmembrane Helix	256	275	0.94
Cytoplasmic	276	285	0.84
Transmembrane Helix	286	305	0.89
Non-Cytoplasmic	306	309	0.56
Transmembrane Helix	310	329	0.72
Cytoplasmic	330	336	0.53
Transmembrane Helix	337	356	0.58
Non-Cytoplasmic	357	370	0.74
Transmembrane Helix	371	392	0.88
Cytoplasmic	393	404	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVALPRQGII ILTYVLAALE LTCLFMQFSI IPYLSRTLGL DSVSFGYLQT TFGVLQLLGG  60
   61 PVFGRFADQR GARAALTLSF LAASALYLLL VASCSPALPG VFLLFASRLP AALMHTLPAA 120
  121 QMVITDLTAP TKRPTALSRL GLCFGIGVIF GSLLGGTLST AYGIQCPAFL AFVVTLLGAV 180
  181 LSFTCIPVTT KEASVQSAHQ GGTSVFDLKA ISRLLLLPRV LPVFLVKVIS GFPSGLFMVM 240
  241 FSIISMDFFQ LEAAQAGYLM SFFGILQMMI QGLVIGRLST RFPEEALLRS SVLVFAVVGL 300
  301 GMALMSNVFH FCLLLPGLVF SLCALNIVTD SMLTKAVSAS DTGTMLGLCA SVHPLTRTVG 360
  361 PTLGGLLYRS YGVSILGHVQ LMVNLLVLLV LWKKPLSQKG DKAR