YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.55
Transmembrane Helix	43	64	0.89
Cytoplasmic	65	69	0.49
Transmembrane Helix	70	92	0.70
Non-Cytoplasmic	93	115	0.54
Transmembrane Helix	116	137	0.72
Cytoplasmic	138	149	0.59
Transmembrane Helix	150	174	0.84
Non-Cytoplasmic	175	213	0.46
Transmembrane Helix	214	245	0.69
Cytoplasmic	246	255	0.38
Transmembrane Helix	256	277	0.70
Non-Cytoplasmic	278	286	0.52
Transmembrane Helix	287	309	0.87
Cytoplasmic	310	357	0.64
Transmembrane Helix	358	384	0.70
Non-Cytoplasmic	385	417	0.58
Transmembrane Helix	418	438	0.95
Cytoplasmic	439	445	0.53
Transmembrane Helix	446	468	0.90
Non-Cytoplasmic	469	477	0.51
Transmembrane Helix	478	498	0.54
Cytoplasmic	499	528	0.54
Transmembrane Helix	529	551	0.84
Non-Cytoplasmic	552	598	0.57
Transmembrane Helix	599	621	0.87
Cytoplasmic	622	628	0.48
Transmembrane Helix	629	646	0.49
Non-Cytoplasmic	647	647	0.49
Transmembrane Helix	648	668	0.77
Cytoplasmic	669	679	0.64
Transmembrane Helix	680	701	0.94
Non-Cytoplasmic	702	737	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAEKATDKT NVHLSSDHER CPVEEVALVV PETDDPSLPV MTFRAWFLGL TSCVLLIFLN  60
   61 TFFTYRTQPL TISAILMQIA GLPIGKFMAR TLPTTSHNLL GWSFSLNPGP FNIKEHVIIT 120
  121 IFANCGVAYG GGDAYSIGAI TVMKAYYKQS LSFICGLFIV LTTQILGYGW AGILRRYLVD 180
  181 PVDMWWPSNL AQVSLFRALH EKENKSKGLT RMKFFLVALG ASFIYYALPG YLFPILTFSS 240
  241 WVCWAWPNSI TAQQVGSGYH GLGVGAFTLD WAGISAYHGS PLVAPWSSIL NVGVGFIMFI 300
  301 YIIVPVCYWK FNTFDARKFP ISSNQLFTTS GQKYDTTKIL TPQFDLDIGA YNNYGKLYLS 360
  361 PLFALSIGSG FARFTATLTH VALFNGRDIW KQTWSAVNTT KLDIHGKLMQ SYKKVPEWWF 420
  421 YILLAGSVAM SLLMSFVWKE SVQLPWWGML FAFALAFIVT LPIGVIQATT NQQPGYDIIG 480
  481 QFIIGYILPG KPIANLIFKI YGRISTVHAL SFLADLKLGH YMKIPPPCMY TAQLVGTVVA 540
  541 GVVNLGVAWW MLESIQDICD IEGDHPNSPW TCPKYRVTFD ASVIWGLIGP RRLFGPGGMY 600
  601 RNLVGFFLIG AVLPVPVWAL SKIFPNKKWI PLINIPVISY GFAGMPPATP TNIASWLVTG 660
  661 TIFNYFVFNY HKRWWQKYNY VLSAALDAGT AFMGVLLFFA LQNAGHDLKW WGTEVDHCPL 720
  721 ASCPTAPGIK AKGCPVF