YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84796155, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.89
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	142	0.97
Transmembrane Helix	143	162	0.95
Cytoplasmic	163	172	0.86
Transmembrane Helix	173	197	0.88
Non-Cytoplasmic	198	218	0.89
Transmembrane Helix	219	241	0.87
Cytoplasmic	242	256	0.90
Transmembrane Helix	257	278	0.88
Non-Cytoplasmic	279	305	0.91
Transmembrane Helix	306	329	0.89
Cytoplasmic	330	349	0.92
Transmembrane Helix	350	371	0.91
Non-Cytoplasmic	372	386	0.74
Transmembrane Helix	387	410	0.77
Cytoplasmic	411	440	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVNVADLL ATTMTLPITA AAGAATSQAA ATSATNASHL QPATLTGHIS TTAAAKTTTT  60
   61 PTSSLPITSQ FVDASLTSLS LTATSSDASY SSPFSSYLSS DSTFELLSTV GPNITANGSD 120
  121 IAVDNQAELE ESWLDLSLLL LKGFIFSSII LAAVLGNALV IISVQRNRKL RVITNYFVVS 180
  181 LAMADMLVAL CAMTFNASVE LSGGKWMFGP FMCNVYNSLD VYFSTASILH LCCISVDRYY 240
  241 AIVRPLEYPL NMTHKTVCFM LANVWILPAL ISFTPIFLGW YTTEEHLREI SLHPDQCSFV 300
  301 VNKAYALISS SVSFWIPGIV MLVMYWRIFK EAIRQRKALS RTSSNILLNS ARTLGIIMGV 360
  361 FLLCWLPFFL WYVITSLCGP ACPCPDVLVV VLFWIGYFNS TLNPLIYAYF NRDFREAFRN 420
  421 TLECVLPCLE KRNPYNAYYV