YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRAM1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.67
Transmembrane Helix	48	67	0.73
Non-Cytoplasmic	68	123	0.57
Transmembrane Helix	124	143	0.95
Cytoplasmic	144	152	0.79
Transmembrane Helix	153	172	0.94
Non-Cytoplasmic	173	196	0.88
Transmembrane Helix	197	218	0.85
Cytoplasmic	219	238	0.91
Transmembrane Helix	239	261	0.91
Non-Cytoplasmic	262	304	0.94
Transmembrane Helix	305	328	0.73
Cytoplasmic	329	356	0.81
Transmembrane Helix	357	375	0.95
Non-Cytoplasmic	376	388	0.85
Transmembrane Helix	389	411	0.85
Cytoplasmic	412	418	0.86
Transmembrane Helix	419	441	0.89
Non-Cytoplasmic	442	450	0.78
Transmembrane Helix	451	476	0.83
Cytoplasmic	477	507	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRDKNPQRV NRPSYGSISS LPSPAPQPEP SRNTYLSEKI PIPSTEQLLW VLLWATVLGL  60
   61 LCQRLAARLG VVTGKDLGEI CHLYYPKVPR ILLWLTIELA IVGSDMQEVI GTAISFNLLS 120
  121 AGRIPLWGGV LITIVDTFFF LFLDNYGLRK LEAFFGFLVT IMALTFGYEY VVARPSQGAL 180
  181 LKGLFLPSCP GCGQPELLQA VGIVGAIIMP HNIYLHSALV KSREVDRTRR GDVREANMYF 240
  241 LTEATIALFV SFIINLFVMA VFGQAFYQQT NEEAFNICAN SSLHNYAKIF PRDNNTVSVD 300
  301 IYQGGVILGC LFGPAALYIW AVGLLAAGQS STMTGTYAGQ FVMEGFLKLR WSRFARVLLT 360
  361 RSCAILPTVL VAVFRDLRDL SGLNDLLNVL QSLLLPFAVL PILTFTSMPA VMQEFANGWL 420
  421 SKVITSCIMA LVCAINLYFV ISYLPSLPHP AYFGLVALLA IGYLGLTAYL AWTCCIAHGA 480
  481 KFLTHSSHQR FLYGLPIEEQ EGREGSG