YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NCKX5_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.97
Transmembrane Helix	15	35	0.93
Non-Cytoplasmic	36	79	0.94
Transmembrane Helix	80	104	0.86
Cytoplasmic	105	119	0.91
Transmembrane Helix	120	143	0.87
Non-Cytoplasmic	144	152	0.80
Transmembrane Helix	153	176	0.86
Cytoplasmic	177	183	0.79
Transmembrane Helix	184	202	0.93
Non-Cytoplasmic	203	208	0.74
Transmembrane Helix	209	230	0.88
Cytoplasmic	231	345	0.92
Transmembrane Helix	346	369	0.87
Non-Cytoplasmic	370	381	0.72
Transmembrane Helix	382	404	0.82
Cytoplasmic	405	415	0.77
Transmembrane Helix	416	433	0.94
Non-Cytoplasmic	434	449	0.79
Transmembrane Helix	450	471	0.93
Cytoplasmic	472	479	0.80
Transmembrane Helix	480	502	0.88
Non-Cytoplasmic	503	513	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTDVFLQRR KRRDVLLSII ALLLLIFAIV HLVFCAGLSF QGSSSARVRR DLENASECVQ  60
   61 PQSSEFPEGF FTVQERKDGG ILIYFMIIFY MLLSVSIVCD EYFLPSLEVI SERLGLSQDV 120
  121 AGATFMAAGS SAPELVTAFL GVFVTKGDIG VSTIMGSAVY NLLCICAACG LLSSAVGRLS 180
  181 CWPLFRDCVA YAISVAAVIA IISDNRVYWY DGACLLLVYG VYVAVLCFDL RISEYVMQRF 240
  241 SPCCWCLKPR DRDSGEQQPL VGWSDDSSLR VQRRSRNDSG IFQDDSGYSH LSLSLHGLNE 300
  301 ISDEHKSVFS MPDHDLKRIL WVLSLPVSTL LFVSVPDCRR PFWKNFYMLT FLMSAVWISA 360
  361 FTYVLVWMVT IVGETLGIPD TVMGMTLLAA GTSIPDTVAS VMVAREGKSD MAMSNIVGSN 420
  421 VFDMLCLGLP WFIQTVFVDV GSPVEVNSSG LVFMSCTLLL SIIFLFLAVH INGWKLDWKL 480
  481 GLVCLACYIL FATLSILYEL GIIGNNPIRS CSD