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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NAPA_COLP3
Protein type: Globular with Signal Peptide
Type Confidence: 0.97
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTINRREFIK ANAIAAAAAV AGVSVPAVAS NLITSSDITK LKWDKAACRF CGTGCSVNVG  60
   61 VMDGKVVATH GDIKSPVNKG LSCVKGYFLS KIMYGKDRLT TPLLRMTNGK YDKEGEFTPI 120
  121 SWDQAFNVMA EKANDALKKD GPEALGMFGS GQWTVQEGYA AVKLMKAGFR TNNIDPNARH 180
  181 CMASAVGGFM RTFGIDEPMG CYDDLEAADA FVLWGSNMAE MHPILWTRLT DRRLSAPHVK 240
  241 VAVLSTFEHR SFDLADNGMI FTPQTDLAIL NYIANYIIQT GRVNKDFVSK HTNFRLGETD 300
  301 IGYGLRPEHP LEQKAKNNGK TKGSSTPIDF DEYAKFVSTY TVESVSKLSG VPEHKLKELA 360
  361 EMYADPKIKV TSFWTMGFNQ HTRGVWANNL VYNIHLLTGK ISTPGNSPFS LTGQPSACGT 420
  421 AREVGTFSHR LPADMVVKNP KHRAIAEKIW DLPEGTIPAK PGYHAVLQNR MLKDGKLNFY 480
  481 WVQCNNNMQA AANINEEAYP GYRNPKNFIV VSDPYPTVTA QAADLILPTA MWVEKEGMYG 540
  541 NAERRTQSWY QMVEAPEGAK SDMWQLVEFS KRFKVEDVWP EELIAKKPEV RGKTLFDVLY 600
  601 KDASVGKFPL SEIPEDRLND ESRDFGFYIQ KGLFEEYASF GRGHAHDLAP YDRYHKERGL 660
  661 RWPVVNGKET KWRFKEGSDP YCKPGSDWDF YGKPDGRAVI FALPYEPAAE SPDEEYDLWL 720
  721 STGRVLEHWH SGSMTQRVPE LYKAMPDALV YMHPDDAKKR NMRRGDLVKL ISRRGEVQTR 780
  781 VETRGRNKPP VGLVYMPWFD ASRLVNKVTL DATDPLSKET DYKKCAIKIV KV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle