YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MRP1_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.64
Transmembrane Helix	36	57	0.90
Cytoplasmic	58	72	0.62
Transmembrane Helix	73	94	0.86
Non-Cytoplasmic	95	102	0.55
Transmembrane Helix	103	124	0.93
Cytoplasmic	125	134	0.56
Transmembrane Helix	135	157	0.85
Non-Cytoplasmic	158	168	0.59
Transmembrane Helix	169	191	0.86
Cytoplasmic	192	314	0.86
Transmembrane Helix	315	334	0.80
Non-Cytoplasmic	335	362	0.83
Transmembrane Helix	363	385	0.89
Cytoplasmic	386	435	0.95
Transmembrane Helix	436	458	0.88
Non-Cytoplasmic	459	464	0.79
Transmembrane Helix	465	484	0.94
Cytoplasmic	485	542	0.96
Transmembrane Helix	543	566	0.87
Non-Cytoplasmic	567	589	0.80
Transmembrane Helix	590	606	0.87
Cytoplasmic	607	962	0.99
Transmembrane Helix	963	984	0.92
Non-Cytoplasmic	985	1015	0.91
Transmembrane Helix	1016	1038	0.83
Cytoplasmic	1039	1091	0.92
Transmembrane Helix	1092	1116	0.85
Non-Cytoplasmic	1117	1192	0.76
Transmembrane Helix	1193	1214	0.86
Cytoplasmic	1215	1221	0.60
Transmembrane Helix	1222	1241	0.62
Non-Cytoplasmic	1242	1525	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIESLCSAD ASEPFWDWNL TWHTENPDFT QCFQNTVLVW VPCIYLWVCF PAYFLYLRSH  60
   61 DRGYIQMSIL NKAKTALGLI LWIVCWADLF YSFWERSQNI FRAPFFLISP TVLGITMLLA 120
  121 TFLIQHERLK GVQSSGVMMI FWLISLLCAT VIFRSKIMLA LNTDTEVDAF RYVTFCTYFI 180
  181 LLLVQLILSC FPEKPPLFSE AVNDPKPCPE FSASFLSRIT FWWITGLMIQ GHRRPLEAKD 240
  241 LWSLNKEDTS EEIVPGLAKN WAKEWAKTKR QPLNMLYSSK KQQKSSDSNG EVMEEAEALI 300
  301 IKPSQRSSEA SLSKVLYKTF GPYFLMSFLF KAAHDLLMFT GPEILKLLIN FVNNKSAPNW 360
  361 QGYFYTGLLF VCACLQTLIL HQYFHICFVT GMRLKTAIVG VIYRKALVIT NSARKTSTVG 420
  421 EIVNLMSVDA QRFMDLATYI NMIWSAPLQV ILALYLLWRN LGPSVLAGVA VMILLVPINA 480
  481 VMAMKTKTYQ VAQMKSKDNR IKLMNEILNG IKVLKLYAWE LAFREKVLEI RQKELKVLKK 540
  541 SAYLAAMGTF TWVCAPFLVA LSTFAVYVKV NKNNILDAQK AFVSLALFNI LRFPLNILPM 600
  601 VISSIVEASV SLKRLRVFLS HEELDPDSII RGPITNAEGS IVVKNATFSW SKTDPPSLNS 660
  661 INFTVPEGSL IAVVGQVGCG KSSLLSALLG EMDKKEGYVV VKGSIAYVPQ QAWIQNATLE 720
  721 DNIIFGREMN ESRYKRVIEA CALLPDLEIL PMGDRTEIGE KGVNLSGGQK QRVSLARAVY 780
  781 CNADTYLFDD PLSAVDAHVG KHIFEKVIGP KGILKNKTRV LVTHAVNYLP QMDTILVMTD 840
  841 GEISEMGSYQ ELLKQDGAFA EFLRTYANAE QSMESSDASS PSGKEGKPVE NGVLVNDATG 900
  901 KLMHRQLSNS STYSRETGKS QHQSSTAELQ KPLAEKNSWK LTEADTAKTG RVKATVYWEY 960
  961 MKAIGLYISF LSVFLFMCNH IASLASNYWL SLWTDDPVVN GTQQYTNVRL GVYGALGISQ1020
 1021 GIAVFGYSMA VSIGGIFASR HLHLDLLHNV LRSPMSFFER TPSGNLVSRF SKEIDTIDST1080
 1081 IPPIIKMFMG STFNVIGACI IILLATPIAA VVIPPLGLVY LLVQRFYVAT SRQLKRLESV1140
 1141 SRSPVYSHFN ETLLGVSVIR AFEEQKRFIK QNDMKVDENQ KAYYPSIVAN RWLAVRLEFV1200
 1201 GNCIVLFAAL FAVIARNKLS PGLIGLSVSY SLQITAYLNW LVRMTSDLET NIVAVERVKE1260
 1261 YAEMEKEAEW SIEETAPAST WPQEGKVEFR GFGLRYREDL DLVLKNINIT INGGEKVGIV1320
 1321 GRTGAGKSSL TLGLFRINEA AEGEIIIDGI NIAKIGLHDL RFKITIIPQD PILFSGSLRM1380
 1381 NLDPFDQHSD EDIWRSLELA HLKNFVSSLP DKLNHECSEG GENLSVGQRQ LVCLARALLR1440
 1441 KSKILVLDEA TAAVDLETDN LIQSTIKSQF EECTVLTIAH RLNTIMDYTR VLVLDRGEVV1500
 1501 ECDSPDNLLQ AKGLFYSMAK DSGLA