YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MDH_RUEPO
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPKIALIG AGQIGGTLAH LVALKELGDV VLFDIAEGTP EGKALDIAES GPSEGFDAKL  60
   61 KGTQSYADIA GADVCIVTAG VPRKPGMSRD DLLGINLKVM KSVGEGIRDN APDAFVICIT 120
  121 NPLDAMVWAL QQFSGLPANK VCGMAGVLDS ARFRHFLAEE FNVSMKDVTA FVLGGHGDTM 180
  181 VPSVRYSTVA GIPLPDLIKM GWTSQEKLDA IVQRTRDGGA EIVGLLKTGS AYYAPATSAI 240
  241 EMAEAYLKDQ KRVLPCAAYC NGELGVKGMY VGVPTVIGAG GIERIIDVSL TKEEQDMFDN 300
  301 SVNAVKGLVE ACKGIDGSLA

Type	Start	End	Confidence
Signal Peptide	1	19	0.89
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	320	0.99