YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LGT_RUEPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAVLNFPDL SPELFSISLF GMEFALRWYA LAYIAGIVIA WRLAVLATRR AALWPANTPP  60
   61 MAPARIEDLL TWIILGVILG GRLGFVLFYQ PAYYLANPTE ILMVWQGGMA FHGGLLGVVI 120
  121 AAWLYSLRHN IPKLSLADLI THTVAPGLLL GRLANFINAE LWGRPSDLPW AVIFPGPAAQ 180
  181 ACPGVVGLCA RHPSQLYEAA LEGLLLGTLL LWLVWRRGAL KRPGLITGVF LAGYGLSRFV 240
  241 VEFFRQPDAQ FVTPGNPLGL AWQVGEYGLT MGQLLSLPMI ALGLWFVLRA RAVPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.92
Transmembrane Helix	25	46	0.90
Cytoplasmic	47	68	0.88
Transmembrane Helix	69	89	0.94
Non-Cytoplasmic	90	107	0.76
Transmembrane Helix	108	127	0.93
Cytoplasmic	128	138	0.79
Transmembrane Helix	139	156	0.66
Non-Cytoplasmic	157	195	0.58
Transmembrane Helix	196	215	0.83
Cytoplasmic	216	223	0.80
Transmembrane Helix	224	241	0.91
Non-Cytoplasmic	242	266	0.88
Transmembrane Helix	267	288	0.92
Cytoplasmic	289	295	0.89