YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LGT_CAMJR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFWQHIYSN FNVIAFSIFG LKVHWYGIMY VIALLLALLL AKFFVRKFQL DINEKHLDSY  60
   61 FIWVEIGVIL GARLGYILIY DANTMYYITH PWQIFNPYIN GEFVGIRGMS YHGAIIGFLI 120
  121 ATLLFCKKYK ANPWIFLDLV ALSVPLAYVF GRIGNFLNQE LFGRITNVPW GIYVDGVLRH 180
  181 PSQLYEAFLE GIVVFIIVYL ARFKQSFQGE LILVYAGAYS LARFICEFYR EPDFGIGFVL 240
  241 WGMSMGQILS FIMFITALLV YICIKFKKVN I

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.89
Transmembrane Helix	21	45	0.85
Cytoplasmic	46	59	0.92
Transmembrane Helix	60	80	0.93
Non-Cytoplasmic	81	103	0.93
Transmembrane Helix	104	126	0.88
Cytoplasmic	127	133	0.90
Transmembrane Helix	134	154	0.91
Non-Cytoplasmic	155	182	0.92
Transmembrane Helix	183	201	0.89
Cytoplasmic	202	210	0.73
Transmembrane Helix	211	229	0.85
Non-Cytoplasmic	230	242	0.77
Transmembrane Helix	243	264	0.90
Cytoplasmic	265	271	0.91