YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAX1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTTPAPPEI TRRSSEPSTQ QGTLGSLEGE KGHLLFPGFV VLVTIFLVVI VTCILWSRKK  60
   61 QKKRRVPYLQ VTPSLALPPP RQRAKNIYDF LPRQQTELGR HQLSGFSTES LLSRASDSPE 120
  121 PEVPQASGSL QKHRASVHAV EYTVGVYDNG TVAQMCGPLA SSAHRVCDGT SRNNSISSKE 180
  181 SNDYVNIPTA EDTSETLTCT KSTPESHLGL PSGQRLEFAE GGHAGCGKAT DRTGVWAPGL 240
  241 QGSNSLSEGD DSSQSSNDYV NMTGLDLEDI QESRPRVAFQ CCRDYENVPP VVANGSQLQT 300
  301 VEEVTSSTTD RGEPAQRTLP SVYHMAFRPS AWSEDGAMIP GEEASNGDSS DYENVLVPEL 360
  361 EGKDWKQGPG TWHPSDERTP SDQAGKFCEA VYPAGSLATE TSGEEV

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.87
Transmembrane Helix	34	56	0.95
Cytoplasmic	57	406	0.88