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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|67466782
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHGVASIGA LLVILAISYC QAELTPPYFN LATGRKIYAT ATCGQDTDGP ELYCKLVGAN  60
   61 TEHDHIDYSV IQGQVCDYCD PTVPERNHPP ENAIDGTEAW WQSPPLSRGM KFNEVNLTIN 120
  121 FEQEFHVAYL FIRMGNSPRP GLWTLEKSTD YGKTWTPWQH FSDTPADCET YFGKDTYKPI 180
  181 TRDDDVICTT EYSKIVPLEN GEIPVMLLNE RPSSTNYFNS TVLQEWTRAT NVRIRLLRTK 240
  241 NLLGHLMSVA RQDPTVTRRY FYSIKDISIG GRCMCNGHAD TCDVKDPKSP VRILACRCQH 300
  301 HTCGIQCNEC CPGFEQKKWR QNTNARPFNC EPCNCHGHSN ECKYDEEVNR KGLSLDIHGH 360
  361 YDGGGVCQNC QHNTVGINCN KCKPKYYRPK GKHWNETDVC SPCQCDYFFS TGHCEEETGN 420
  421 CECRAAFQPP SCDSCAYGYY GYPNCRECEC NLNGTNGYHC EAESGQQCPC KINFAGAYCK 480
  481 QCAEGYYGFP ECKACECNKI GSITNDCNVT TGECKCLTNF GGDNCERCKH GYFNYPTCSY 540
  541 CDCDNQGTES EICNKQSGQC ICREGFGGPR CDQCLPGFYN YPDCKPCNCS STGSSAITCD 600
  601 NTGKCNCLNN FAGKQCTLCT AGYYSYPDCL PCHCDSHGSQ GVSCNSDGQC LCQPNFDGRQ 660
  661 CDSCKEGFYN FPSCEDCNCD PAGVIDKFAG CGSVPVGELC KCKERVTGRI CNECKPLYWN 720
  721 LNISNTEGCE ICDCWTDGTI SALDTCTSKS GQCPCKPHTQ GRRCQECRDG TFDLDSASLF 780
  781 GCKDCSCDVG GSWQSVCDKI SGQCKCHPRI TGLACTQPLT THFFPTLHQF QYEYEDGSLP 840
  841 SGTQVRYDYD EAAFPGFSSK GYVVFNAIQN DVRNEVNVFK SSLYRIVLRY VNPNAENVTA 900
  901 TISVTSDNPL EVDQHVKVLL QPTSEPQFVT VAGPLGVKPS AIVLDPGRYV FTTKANKNVM 960
  961 LDYFVLLPAA YYEAGILTRH ISNPCELGNM ELCRHYKYAS VEVFSPAATP FVIGENSKPT1020
 1021 NPVETYTDPE HLQIVSHVGD IPVLSGSQNE LHYIVDVPRS GRYIFVIDYI SDRNFPDSYY1080
 1081 INLKLKDNPD SETSVLLYPC LYSTICRTSV NEDGMEKSFY INKEDLQPVI ISADIEDGSR1140
 1141 FPIISVTAIP VDQWSIDYIN PSPVCVIHDQ QCATPKFRSV PDSKKIEFET DHEDRIATNK1200
 1201 PPYASLDERV KLVHLDSQNE ATIVIESKVD ATKPNLFVIL VKYYQPSHPK YQVYYTLTAG1260
 1261 KNQYDGKFDI QHCPSSSGCR GVIRPAGEGS FEIDDEFKFT ITTDRSQSVW LDYLVVVPLK1320
 1321 QYNDDLLVEE TFDQTKEFIQ NCGHDHFHIT HNASDFCKKS VFSLTADYNS GALPCNCDYA1380
 1381 GSTSFECHPF GGQCQCKPNV IERTCGACRS RYYGFPDCKP CKCPNSAMCE PTTGECMCPP1440
 1441 NVIGDLCEKC APNTYGFHQV IGCEECACNP MGIANGNSQC DLFNGTCECR QNIEGRACDV1500
 1501 CSNGYFNFPH CEQCSCHKPG TELEVCDKID GACFCKKNVV GRDCDQCVDG TYNLQESNPD1560
 1561 GCTTCFCFGK TSRCDSAYLR VYNVSLLKHV SITTPEFHEE SIKFDMWPVP ADEILLNETT1620
 1621 LKADFTLREV NDERPAYFGV LDYLLNQNNH ISAYGGDLAY TLHFTSGFDG KYIVAPDVIL1680
 1681 FSEHNALVHT SYEQPSRNEP FTNRVNIVES NFQTISGKPV SRADFMMVLR DLKVIFIRAN1740
 1741 YWEQTLVTHL SDVYLTLADE DADGTGEYQF LAVERCSCPP GYSGHSCEDC APGYYRDPSG1800
 1801 PYGGYCIPCE CNGHSETCDC ATGICSKCQH GTEGDHCERC VSGYYGNATN GTPGDCMICA1860
 1861 CPLPFDSNNF ATSCEISESG DQIHCECKPG YTGPRCESCA NGFYGEPESI GQVCKPCECS1920
 1921 GNINPEDQGS CDTRTGECLR CLNNTFGAAC NLCAPGFYGD AIKLKNCQSC DCDDLGTQTC1980
 1981 DPFVGVCTCH ENVIGDRCDR CKPDHYGFES GVGCRACDCG AASNSTQCDP HTGHCACKSG2040
 2041 VTGRQCDRCA VDHWKYEKDG CTPCNCNQGY SRGFGCNPNT GKCQCLPGVI GDRCDACPNR2100
 2101 WVLIKDEGCQ ECNNCHHALL DVTDRMRYQI DSVLEDFNSV TLAFFTSQKL NYYDQLADEL2160
 2161 EPKVKLLDPN SVDLSPSKKA NSELESDAKS YAKQVNQTLA NAFDIRERSS TTLGNITVAY2220
 2221 DEAVKSADQA KEAIASVEAL SKNLEAAAST KIDAALEQAQ HILGQINGTS IELTPNEQVL2280
 2281 EKARKLYEEV NTLVLPIKAQ NKSLNALKND IGEFSDHLED LFNWSEASQA KSADVERRNV2340
 2341 ANQKAFDNSK FDTVSEQKLQ AEKNIKDAGN FLINGDLTLN QINQKLDNLR DALNELNSFN2400
 2401 KNVDEELPVR EDQHKEADAL TDQAEQKAAE LAIKAQDLAA QYTDMTASAE PAIKAATAYS2460
 2461 GIVEAVEAAQ KLSQDAISAA GNATDKTDGI EERAHLADTG STDLLQRARQ SLQKVQDDLE2520
 2521 PRLNASAGKV QKISAVNNAT EHQLKDINKL IDQLPAESQR DMWKNSNANA SDALEILKNV2580
 2581 LEILEPVSVQ TPKELEKAHG INRDLDLTNK DVSQANKQLD DVEGSVSKLN ELAEDIEEQQ2640
 2641 HRVGSQSRQL GQEIENLKAQ VEAARQLANS IKVGVNFKPS TILELKTPEK TKLLATRTNL2700
 2701 STYFRTTEPS GFLLYLGNDN KTAQKNNDFV AVEIVNGYPI LTIDLGNGPE RITSDKYVAD2760
 2761 GRWYQAVVDR MGPNAKLTIR EELPNGDVVE HSKSGYLEGS QNILHVDKNS RLFVGGYPGI2820
 2821 SDFNAPPDLT TNSFSGDIED LKIGDESVGL WNFVYGDDND QGARERDVLL EKKKPVTGLR2880
 2881 FKGNGYVQLN ATSNLKSRSS IQFSFKADKD TSNGLLFFYG RDKHYMSIEM IDGAIFFNIS2940
 2941 LGEGGGVQSG SQDRYNDNQW HKVQAERENR NGLLKVDDIV ISRTNAPLEA DLELPKLRRL3000
 3001 YFGGHPRRLN TSISLQPNFD GCIDNVVINQ GVVDLTEYVT GGGVEEGCSA KFSTVVSYAP3060
 3061 HEYGFLRMNN VSSDNNLHVV LHFKTTQPNG VLFYAANHDQ SSTIGLSLQD GLLKLNSMGS3120
 3121 QLVIDDRILN DGEDHVVTVQ HTQGELRLTV DDVDNKRLGS PQPLILEGGD IFFAGLPDNY3180
 3181 RTPRNALASL AYFVGCISDV TVNEEIINFA NSAEKKNGNI NGCPPHVLAY EPSLVPSYYP3240
 3241 SGDNEVESPW SNADTLPPLK PDIESTLPPT TPTTTTTTTT TTTSTTTTST TTTTTTPSPI3300
 3301 VIDEEKEIEA KTPQKILTTR PPAKLNLPSD ERCKLPEQPN FDVDFTEAGY RFYGLREQRL3360
 3361 QINSLPVKVR RHHDIGISFR TERPNGLLIY AGSKQRDDFI AVYLLDGRVT YEIRVGAQLQ3420
 3421 AKITTEAELN DGTWHTVEVV RTQRKVSLLI DKLEQPGSVD LNAERSAPVL AVELPIYLGG3480
 3481 VNKFLESEVK NLTDFKTEVP YFNGCLKNIK FDAMDLETPP EEFGVVPCSE QVERGLFFNN3540
 3541 QKAFVKIFDH FDVGTEMKIS FDFRPRDPNG LLFSVHGKNS YAILELVDNT LYFTVKTDLK3600
 3601 NIVSTNYKLP NNESFCDGKT RNVQAIKSKF VINIAVDFIS SNPGVGNEGS VITRTNRPLF3660
 3661 LGGHVAFQRA PGIKTKKSFK GCISKVEVNQ RMINITPNMV VGDIWQGYCP LN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle