YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KUP_ZYMMO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.90
Transmembrane Helix	34	56	0.81
Non-Cytoplasmic	57	71	0.94
Transmembrane Helix	72	95	0.88
Cytoplasmic	96	124	0.92
Transmembrane Helix	125	144	0.91
Non-Cytoplasmic	145	164	0.87
Transmembrane Helix	165	183	0.94
Cytoplasmic	184	195	0.72
Transmembrane Helix	196	214	0.93
Non-Cytoplasmic	215	238	0.81
Transmembrane Helix	239	258	0.94
Cytoplasmic	259	269	0.86
Transmembrane Helix	270	293	0.89
Non-Cytoplasmic	294	313	0.90
Transmembrane Helix	314	337	0.90
Cytoplasmic	338	358	0.88
Transmembrane Helix	359	382	0.89
Non-Cytoplasmic	383	390	0.81
Transmembrane Helix	391	411	0.95
Cytoplasmic	412	419	0.79
Transmembrane Helix	420	439	0.92
Non-Cytoplasmic	440	446	0.80
Transmembrane Helix	447	466	0.93
Cytoplasmic	467	652	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDTSPGTS SVDSKSSDPS YGVPGHSHSD KDLLKLSLGA IGIVFGDIGT SPLYALKECF  60
   61 KGHHQLPVDD FHIYGLVSLI FWTMGLVVTV KYVMFIMKAD NKGEGGSMSL LSLIIRGANP 120
  121 KLSRWLIVLG VFATALFYGD SMITPAMSVL SAVEGLTVIE PSFDSWVPPV SVVILIGLFC 180
  181 IQARGTESVG RLFGPIMLVY FATLAILGAF NIITRSPAIL LALNPYYAIH FFASDPLQGF 240
  241 WALGSVVLSV TGAEALYADM GHFGRQPISL GWYWVVFPAL TLNYLGQCAL LSADHEAIAN 300
  301 PFYFLAPDFL RVPLIILATF AAVIASQAVI TGAFSVTQQA IQLGYIPRLR VNHTSASTVG 360
  361 QIYIPSVNWV LMFMVMVLIA MFKNSTNLAN AYGIAVTGTM FITSCMMGVL VHRVWHWKAW 420
  421 QSIPLVSFFL LIDGAFFLSN VTKIPEGGWF PLLVGFVVFT MLMTWSRGRH LMAERMRQVA 480
  481 MPIQLFIRSA AASAVRIPGT AIFLTPEDDG VPHALLHNLK HNKILHERVI LLTVKIEDVP 540
  541 YVDPHYRASM SSLEDGFYRL IVRYGFMEEP DVPLALNKIE QSGPMLRMDD TSFFISRQTL 600
  601 IPSTHTSMAI WREKLFAWML RNSESATEFF KLPSNRVVEL GSQIELVGSN GK