YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KUP_AROAE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.93
Transmembrane Helix	25	47	0.84
Non-Cytoplasmic	48	65	0.93
Transmembrane Helix	66	88	0.91
Cytoplasmic	89	116	0.96
Transmembrane Helix	117	138	0.88
Non-Cytoplasmic	139	155	0.87
Transmembrane Helix	156	175	0.92
Cytoplasmic	176	185	0.78
Transmembrane Helix	186	209	0.87
Non-Cytoplasmic	210	229	0.87
Transmembrane Helix	230	251	0.91
Cytoplasmic	252	262	0.87
Transmembrane Helix	263	284	0.91
Non-Cytoplasmic	285	302	0.94
Transmembrane Helix	303	327	0.85
Cytoplasmic	328	351	0.91
Transmembrane Helix	352	375	0.88
Non-Cytoplasmic	376	381	0.80
Transmembrane Helix	382	404	0.90
Cytoplasmic	405	412	0.72
Transmembrane Helix	413	432	0.91
Non-Cytoplasmic	433	438	0.73
Transmembrane Helix	439	458	0.95
Cytoplasmic	459	640	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQALEGVNTS PAAAAAAHAP APRRGIAGLA VAAVGVVYGD IGTSPLYTLK EVFNGPHAVP  60
   61 VTPQNVYGIL SLVFWALVLV VSAKYVLFIT RADNRGEGGI MALTSLVLRA VPPGRKAWVL 120
  121 SALGVFGAAL FYGDGMITPA ISVLSAVEGL EVATPAFRPY VLPIALAVLC GLFVIQRHGT 180
  181 GSVGRIFGPV MLVWFVLLAV LGIAGITLHP EIIGALDPRW ALRFFADMPL VGWLSLGAVV 240
  241 LAITGGEALY ADMGHFGRRP IKFAWFLVVF PSLYLNYLGQ GALILDHPDN VRNPFYLLVP 300
  301 DALVYPMVAM ATLATIIASQ AVISGAYSLT RQAMQLGYAP RMRTIFTSER EMGQIYVPSI 360
  361 NWMLLGAVVA LVVGFRSSSA LASAYGIAVT LTMMIDTLLA FVVVRALWGW GRLQAGLFLG 420
  421 VFLAVDVAFF SATTVKILAG GWFPLLVGAL IFTLLTTWKR GRELLNRRLR TDTIPLDTFI 480
  481 RSMFNSPSPR VDGTAVFLTT WLEGVPRALL HNLVHNKVLH HRVVLLTVET ADVPHVPDSE 540
  541 RVAVEELDYG FYRVRVNYGF KDDPDLPAAL VRCADFGLKF AMMETSFFLG RETLVSRVGS 600
  601 GMPRWREKLF IVMFRNAGSA ADYFHIPPNR VVELGTQVEL