YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KISSR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEATLGPN VSWWAPSNAS GCPGCGVNAS DGPGSAPRPL DAWLVPLFFA ALMLLGLVGN  60
   61 SLVIFVICRH KHMQTVTNFY IANLAATDVT FLLCCVPFTA LLYPLPTWVL GDFMCKFVNY 120
  121 IQQVSVQATC ATLTAMSVDR WYVTVFPLRA LHRRTPRLAL TVSLSIWVGS AAVSAPVLAL 180
  181 HRLSPGPHTY CSEAFPSRAL ERAFALYNLL ALYLLPLLAT CACYGAMLRH LGRAAVRPAP 240
  241 TDGALQGQLL AQRAGAVRTK VSRLVAAVVL LFAACWGPIQ LFLVLQALGP SGAWHPRSYA 300
  301 AYALKIWAHC MSYSNSALNP LLYAFLGSHF RQAFCRVCPC GPQRQRRPHA SAHSDRAAPH 360
  361 SVPHSRAAHP VRVRTPEPGN PVRRSPSVQD EHTAPL

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.77
Transmembrane Helix	44	68	0.89
Cytoplasmic	69	78	0.90
Transmembrane Helix	79	103	0.86
Non-Cytoplasmic	104	122	0.81
Transmembrane Helix	123	143	0.85
Cytoplasmic	144	157	0.92
Transmembrane Helix	158	180	0.91
Non-Cytoplasmic	181	204	0.94
Transmembrane Helix	205	228	0.88
Cytoplasmic	229	263	0.94
Transmembrane Helix	264	284	0.93
Non-Cytoplasmic	285	304	0.85
Transmembrane Helix	305	326	0.72
Cytoplasmic	327	396	0.83