YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ITAD_MOUSE
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFKTIWIER YRKLINLFRA LASCHGSNLD VEKPVVFKED AASFGQTVVQ FGGSRLVVGA  60
   61 PLEAVAVNQT GQLYDCAPAT GVCQPILLHI PLEAVNMSLG LSLVADTNNS QLLACGPTAQ 120
  121 RACAKNMYAK GSCLLLGSSL QFIQAIPATM PECPGQEMDI AFLIDGSGSI DQSDFTQMKD 180
  181 FVKALMGQLA STSTSFSLMQ YSNILKTHFT FTEFKSSLSP QSLVDAIVQL QGLTYTASGI 240
  241 QKVVKELFHS KNGARKSAKK ILIVITDGQK FRDPLEYRHV IPEAEKAGII RYAIGVGDAF 300
  301 REPTALQELN TIGSAPSQDH VFKVGNFVAL RSIQRQIQEK IFAIEGTESR SSSSFQHEMS 360
  361 QEGFSSALSM DGPVLGAVGS FSWSGGAFLY PSNMRSTFIN MSQENEDMRD AYLGYSTALA 420
  421 FWKGVHSLIL GAPRHQHTGK VVIFTQESRH WRPKSEVRGT QIGSYFGASL CSVDMDRDGS 480
  481 TDLVLIGVPH YYEHTRGGQV SVCPMPGVRS RWHCGTTLHG EQGHPWGRFG AALTVLGDVN 540
  541 GDSLADVAIG APGEEENRGA VYIFHGASRQ DIAPSPSQRV TGSQLFLRLQ YFGQSLSGGQ 600
  601 DLTQDGLVDL AVGAQGHVLL LRSLPLLKVG ISIRFAPSEV AKTVYQCWGR TPTVLEAGEA 660
  661 TVCLTVRKGS PDLLGDVQSS VRYDLALDPG RLISRAIFDE TKNCTLTRRK TLGLGDHCET 720
  721 MKLLLPDCVE DAVTPIILRL NLSLAGDSAP SRNLRPVLAV GSQDHVTASF PFEKNCKQEL 780
  781 LCEGNLGVSF NFSGLQVLEV GSSPELTVTV TVWNEGEDSY GTLIKFYYPA ELSYRRVTRA 840
  841 QQPHPYPLRL ACEAEPTGQE SLRSSSCSIN HPIFREGAKA TFMITFDVSY KAFLGDRLLL 900
  901 RASASSENNK PETSKTAFQL ELPVKYTVYT VISRQEDSTK HFNFSSSHGE RQKEAEHRYR 960
  961 VNNLSPLTLA ISVNFWVPIL LNGVAVWDVT LRSPAQGVSC VSQREPPQHS DLLTQIQGRS1020
 1021 VLDCAIADCL HLRCDIPSLG TLDELDFILK GNLSFGWISQ TLQKKVLLLS EAEITFNTSV1080
 1081 YSQLPGQEAF LRAQVSTMLE EYVVYEPVFL MVFSSVGGLL LLALITVALY KLGFFKRQYK1140
 1141 EMLDLPSADP DPAGQADSNH ETPPHLTS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle