YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PCFT_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.90
Transmembrane Helix	19	38	0.86
Non-Cytoplasmic	39	84	0.93
Transmembrane Helix	85	107	0.88
Cytoplasmic	108	115	0.89
Transmembrane Helix	116	137	0.93
Non-Cytoplasmic	138	144	0.73
Transmembrane Helix	145	168	0.85
Cytoplasmic	169	180	0.85
Transmembrane Helix	181	203	0.91
Non-Cytoplasmic	204	211	0.81
Transmembrane Helix	212	231	0.96
Cytoplasmic	232	266	0.94
Transmembrane Helix	267	285	0.92
Non-Cytoplasmic	286	308	0.78
Transmembrane Helix	309	325	0.68
Cytoplasmic	326	332	0.51
Transmembrane Helix	333	354	0.75
Non-Cytoplasmic	355	357	0.43
Transmembrane Helix	358	377	0.69
Cytoplasmic	378	388	0.64
Transmembrane Helix	389	410	0.92
Non-Cytoplasmic	411	422	0.58
Transmembrane Helix	423	443	0.93
Cytoplasmic	444	459	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGRVSPVGS SHRLLTAAVL FRGPVEPLVF LANFALVLQG PLTTQYIWHR ISTELGYNGT  60
   61 RHRENCGNQS ADPVLKEVET LTSHWTLYMN VGGFLVGLFW STLLGAWSDR VGRRPLLVLA 120
  121 SLGLLLQAVV SIFVVQLQLH IGFFVLGRAL CALLGDFNGL LAASFASVAD VSSNHSRTFR 180
  181 MALLEACIGV AGTLASLLGG HWLRAQGYAN PFWLALAVLI VMTLYAAFCF GETVKEPKST 240
  241 RLFTLRHHRS IVQLYVVPAP EKSRMHLALY SLAIFVVVTV HFGAQDILTL YELSTPLCWD 300
  301 SKLIGYGSAA QHLPYLTSLL GLRLLQFCLA DTWVAEIGLA FNILGMVVFA FATITPLMFT 360
  361 GYGLLFLSLV TTPVIRAKLS KLVSESEQGA LFSAVACVNS LAMLMASGIF NSLYPATLNF 420
  421 MKGFPFLLGA GLLFIPAILI GVLEKVNPHP EFQQFPQNS