YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159131609
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.71
Transmembrane Helix	21	41	0.88
Cytoplasmic	42	47	0.72
Transmembrane Helix	48	70	0.81
Non-Cytoplasmic	71	76	0.61
Transmembrane Helix	77	96	0.88
Cytoplasmic	97	134	0.94
Transmembrane Helix	135	158	0.85
Non-Cytoplasmic	159	171	0.86
Transmembrane Helix	172	193	0.89
Cytoplasmic	194	210	0.92
Transmembrane Helix	211	230	0.77
Non-Cytoplasmic	231	242	0.73
Transmembrane Helix	243	262	0.68
Cytoplasmic	263	267	0.46
Transmembrane Helix	268	287	0.62
Non-Cytoplasmic	288	311	0.89
Transmembrane Helix	312	331	0.90
Cytoplasmic	332	350	0.90
Transmembrane Helix	351	373	0.91
Non-Cytoplasmic	374	391	0.89
Transmembrane Helix	392	414	0.82
Cytoplasmic	415	444	0.86
Transmembrane Helix	445	464	0.91
Non-Cytoplasmic	465	472	0.72
Transmembrane Helix	473	494	0.92
Cytoplasmic	495	501	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPDYKARKE AFVSGLAGGS ILEINAVTLV ASVSVFLWSI LQSRLSFFTP YSAAALLVDF  60
   61 LLNVLAILFA TTLYSSAPLL LNLLLISPAL LILLSTKRPR TPVKAKPPRQ SARAGKDDSK 120
  121 HATALPESLP IHPFLTTYRA AMMVITCIAI LAVDFRIFPR RFAKVENWGT SLMDLGVGSF 180
  181 VFSGGVVSAR SLLKSRINGS KRLPLAKRLI ASTRHSIPLL VLGLIRLYSV KGLDYAEHVT 240
  241 EYGVHWNFFF TLGLLPPFVE VFDALATIIP SYEVLSVGIA VLYQVALEST DLKSYILVSP 300
  301 RGPSLLSKNR EGVFSFSGYL AIFLAGRAIG IRIIPRGTSF SRSPEQARRR VLISLGVQAL 360
  361 VWTTLFVLNS TYAMGYGANI PVSRRLANMP YVLWVSAFNT AQLFVFCLIE TLCFPAVHRT 420
  421 TTQESESERV DFATSRIMSA FNKNSLAIFL LANLLTGAVN LSISTIDANT AQAIAVLIGY 480
  481 SSIITGVALA LHHANIKVLP F