YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPSR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPANLTEGSF HANQTVPMLD SSPVACTEIV TFTEALEAEE WGSFYSSFKT EQLITLWVLF  60
   61 VFTIVGNSVV LFSTWRRKRK SRMTFFVTQL AITDSFTGLI NILTDIIWRF TGDFMAPDLV 120
  121 CRIVRYLQVV LLYASTYVLV SLSIDRYHAI VYPMKFLQGA EKQAKVLIGI AWSLSFLFSI 180
  181 PTLIIFGKRT LSNGEVQCWA LWPDDSYWTP YMTIVAFLVY FIPLTIISVI YGLVIRTIWI 240
  241 KSKAHETVIS NCSDGELCCS YNRGLISKAK IKAIKYSIVI ILAFICCWSP YFLFDMLDNF 300
  301 NLLPDTKERF YASVIIQNLP ALNSAINPLI YCIFSGSLCS PCKVQRSQDS RMTYRERSER 360
  361 HEMQILSKPE FI

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.94
Transmembrane Helix	53	75	0.92
Cytoplasmic	76	84	0.92
Transmembrane Helix	85	107	0.87
Non-Cytoplasmic	108	123	0.89
Transmembrane Helix	124	145	0.84
Cytoplasmic	146	165	0.86
Transmembrane Helix	166	186	0.95
Non-Cytoplasmic	187	211	0.91
Transmembrane Helix	212	235	0.91
Cytoplasmic	236	272	0.97
Transmembrane Helix	273	294	0.93
Non-Cytoplasmic	295	323	0.91
Transmembrane Helix	324	342	0.73
Cytoplasmic	343	372	0.78