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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GOGA5_RAT
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWFADLAGR AEDLLNRVDQ GAATALRKES TSNTFYSKNT DYPELHQQNT DSTYHTGQKA  60
   61 NYISSAADNI RHQKATIIAG TANVKVGSRT GGDASHPTEH ASVPRPSSHF VRRKKSEPDD 120
  121 ELLFDFLNSS QKEPTGRVEI KKEKGKAPVL PSSQSSAVSS VTTSVTTIKA TEENSGSQSP 180
  181 EVSSSDSMPE GHKKSTEEST VSNAISVEHS SVPSDGSMSH ELSNLRLENQ LLRNEVQSLN 240
  241 QEMASLLQRS KETQEELNEA RVRVEKWNVD NSKSDRITRE LRAQVDDLTE AVAAKDSQLA 300
  301 VLKVRLQEAD QVLSSRTEAL EALQSEKSRI MQDHNEGSSL QNQALQTLQE RHEADATLKR 360
  361 EQESYKQMQS EFATRLNKME VERQNLAEAV TLAERKYSEE RKKVDDLQQQ VKLHRSSLES 420
  421 AKQELVDYKQ KATRILQSKE KLINSLKEGS SFEGLDSSTA SSMELEELRH ERELQKEEIQ 480
  481 KLMGQIHQLR SELQDMEAQQ VSEAESAREQ LQDLQDQIAK QRASKQELET ELDRMKQEFH 540
  541 YVEEDLHRTK NTLQSRIKDR EEEIQKLRNQ LTNKTLSNSS QSELESRLHQ LTETLIQKQT 600
  601 LLESLSTEKN SLVFQLERLE QQLHSAATGP SSGSSINMSG VDSGEGTRLR NVPVLFNDTE 660
  661 TNLAGMYGKV RKAASSIDQF SIRLGIFLRR YPIARVFVII YMALLHLWVM IVLLTYSPEM 720
  721 HHDQPYGK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle