YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60416413
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDWTGKNVV YVGSFSGIGW QMMMQLMQKD IKMMGIMHRM ENVEMMKKLQ AINPSVKVVF  60
   61 MQMNLMEKMS IEQAMKKMGQ MMGHIDVMIN GEGVLLDKDV ETTMGMNLTG MIQSTMMAMP 120
  121 YMDKTQMGMG GMVVNMSSVY GLEPAPAFAV YAAAMHGILG FTRSMGDKMI YQKTGVMFMA 180
  181 MCPGLTNSEM IMNLRDNVTW HHSESMVEAI ESAKRQMPEE AAMQMIHAME MMKNGSMWIV 240
  241 SMGQLKEVTP TMHWQM

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.63
Transmembrane Helix	8	27	0.61
Cytoplasmic	28	104	0.76
Transmembrane Helix	105	122	0.41
Non-Cytoplasmic	123	139	0.58
Transmembrane Helix	140	162	0.67
Cytoplasmic	163	256	0.62