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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: EXT1C_DANRE
Protein type: Transmembrane
Type Confidence: 0.61
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQARKKYVLL GLCTCCWILL YYWAGLQERL LGLITHRRGE VPRPWPDWLD RALLPNFAEQ  60
   61 LDLQNGGGPG DSPRQRKQAW SSIYKDSRCR MDTCFDFGRC QTQSGFRVYI YPPEKGERVS 120
  121 EGYRKILTSV SESRYYTSDP REACLFVLGI DTLDRDQLSQ QFVPNVDERI RGYPLWNDGR 180
  181 NHVIFNLYSG TWPNYTEDLG FNVGQAILAK ASLNTEHFRP GFDISIPLFS KEHPQKGGKR 240
  241 GWLVRNSVPP RRKYLLMFKG KRYLTGIGSD TRNALHHIHN GKDIVSLTTC RHGKDWEKHK 300
  301 DARCDHDNQE YERFDYQELL HNSTFCLVPR GRRLGSFRFL ESLQAACIPV LLSNGWELPF 360
  361 SDVIQWNQAV VEGDERLLLQ VPSTVRAVGI DRVLALRQQT QTLWDAYFSS VDKIVLTTLE 420
  421 IIKDRVYSHI SRNKLMWNAL PGGLLVLPEF STHLAHYPFY YLHLGISPGL EFTAVIHATS 480
  481 PLVSQSQPIM KLLQVVSKSK YCSQIIILWN SEKSPPQRSK WPPMPVPLTV TDGRRKTSSR 540
  541 FLPHAAIETE AVLSLDEDTV LLTSEINFAF HVWRSFPDRI VGYPPRSHFW DPVKKAWGYT 600
  601 SKWTNEYSII LTGAAFYHRY YHHLFSHYLP SSLRALVDHS CNCEDILMNF LVSSVAHLPP 660
  661 VKVAQRKQYK EMPSLQGTKM APWANPEHFT QRQECVNTFS SWFGYMPLEH SQFRLDPVLF 720
  721 KDHVSVLRKR YKDLERV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle