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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: EXT1B_DANRE
Protein type: Globular with Signal Peptide
Type Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAKKRYLIS LLTGAFLVLL IYLGGGGVPG PAAPGSRSRT HGYNRPDQPW PHFSDPLQHF  60
   61 SPWDHSDTED YNVHISPRQK RDVNSSVYKG KRCRMQSCFD FSLCQRNGFK VYVYPQQKGE 120
  121 KISESYQNIL STIEGSRFYT SDPGQACVFV LSLDTLDRDQ LSPQYVHNLK TKVQSLALWN 180
  181 NGRNHLIFNL YSGTWPDYTE DLGFDIGQAM LAKASISTEN FRPNFDISIP LFSKEHPRTG 240
  241 GDRGYLKYNT IPPFRKYMLV FKGKRYLTGI GSDTRNALYH VHNAEDVVLL TTCKHGKDWQ 300
  301 KHKDARCDKD NAEYDKYDYR EMLHNSTFCL VPRGRRLGSF RFLEALQAAC VPVMLSNGWE 360
  361 LPFSEVIDWN TAAVIGDERL LLQIPSTVRS IHQDKILALR QQTQFLWEAY FSSVEKIVLT 420
  421 TLEIIQDRVL QQSSRSSVMW NSHPGGLFSL PQYSSYLGDL PFFYAKLGIK PSPKFTAVIH 480
  481 AVTPLVSQSQ PILKLIVSVA RSQYCAQIIV LWNCDKPLPA KQRWPATAVP IIVIEGENKV 540
  541 MSSRFQPYES LISDAVLSLD EDTVLSTTEV DFAFTVWQSF PERIVGYPAR SHFWDNNKER 600
  601 WGYTSKWTND YSMVLTGAAI YHRYYHFLYT HFLPSSLKSM VDQLANCEDI LMNFLVSAVT 660
  661 KLPPVKVTQK KQYKETMMGQ SSRASRWADP DHFAQRQTCM NKFASWFGGM PLVHSQMRLD 720
  721 PVLFKDQVSI LRKKYREIER L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle