YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ELN_RAT
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.69
Transmembrane Helix	7	28	0.60
Non-Cytoplasmic	29	48	0.82
Transmembrane Helix	49	69	0.90
Cytoplasmic	70	76	0.84
Transmembrane Helix	77	97	0.91
Non-Cytoplasmic	98	104	0.63
Transmembrane Helix	105	124	0.73
Cytoplasmic	125	130	0.61
Transmembrane Helix	131	152	0.84
Non-Cytoplasmic	153	157	0.56
Transmembrane Helix	158	181	0.78
Cytoplasmic	182	312	0.57
Transmembrane Helix	313	332	0.56
Non-Cytoplasmic	333	333	0.39
Transmembrane Helix	334	355	0.70
Cytoplasmic	356	378	0.60
Transmembrane Helix	379	407	0.65
Non-Cytoplasmic	408	452	0.46
Transmembrane Helix	453	483	0.68
Cytoplasmic	484	490	0.63
Transmembrane Helix	491	513	0.79
Non-Cytoplasmic	514	530	0.71
Transmembrane Helix	531	553	0.80
Cytoplasmic	554	561	0.77
Transmembrane Helix	562	584	0.81
Non-Cytoplasmic	585	591	0.65
Transmembrane Helix	592	614	0.64
Cytoplasmic	615	625	0.71
Transmembrane Helix	626	648	0.74
Non-Cytoplasmic	649	651	0.55
Transmembrane Helix	652	674	0.79
Cytoplasmic	675	680	0.74
Transmembrane Helix	681	700	0.84
Non-Cytoplasmic	701	708	0.65
Transmembrane Helix	709	729	0.89
Cytoplasmic	730	737	0.78
Transmembrane Helix	738	759	0.90
Non-Cytoplasmic	760	765	0.64
Transmembrane Helix	766	790	0.82
Cytoplasmic	791	798	0.72
Transmembrane Helix	799	822	0.62
Non-Cytoplasmic	823	845	0.66
Transmembrane Helix	846	865	0.68
Cytoplasmic	866	870	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLTAAVPQ PGVLLILLLN LLHPAQPGGV PGAVPGGVPG GLPGGVPGGV YYPGAGIGGG  60
   61 LGGGALGPGG KPPKPGAGLL GAFGAGPGGL GGAGPGAGLS YASRPGGVLV PGGGAGAAAA 120
  121 YKAAAKAGAG LGGIGGVPGG VGVGGVPGAV GVGGVPGAVG GIGGIGGLGV STGAVVPQLG 180
  181 AGVGAGGKPG KVPGVGLPGV YPGGVLPGTG ARFPGVGVLP GVPTGTGVKA KVPGGGGGAF 240
  241 SGIPGVGPFG GQQPGVPLGY PIKAPKLPGG YGLPYTNGKL PYGVAGAGGK AGYPTGTGVG 300
  301 SQAAVAAAKA AKYAGAGGGG VLPGVGGGGI PGGAGAIPGI GGITGAGTPA AAAAAKAAAK 360
  361 AAKYGAAGGL VPGGPGVRVP GAGIPGVGIP GVGGIPGVGG IPGVGGIPGV GGPGIGGPGI 420
  421 VGGPGAVSPA AAAKAAAKAA KYGARGGVGI PTYGVGAGGF PGYGVGAGAG LGGASQAAAA 480
  481 AAAAKAAKYG AGGAGTLGGL VPGAVPGALP GAVPGALPGA VPGALPGAVP GVPGTGGVPG 540
  541 AGTPAAAAAA AAAKAAAKAG QYGLGPGVGG VPGGVGVGGL PGGVGPGGVT GIGTGPGTGL 600
  601 VPGDLGGAGT PAAAKSAAKA AAKAQYRAAA GLGAGVPGLG VGAGVPGFGA GAGGFGAGAG 660
  661 VPGFGAGAVP GSLAASKAAK YGAAGGLGGP GGLGGPGGLG GPGGFGGPGG LGGVPGGVAG 720
  721 GAPAAAAAAK AAAKAAQYGL GGAGGLGAGG LGAGGLGAGG LGAGGLGAGG LGAGGVIPGA 780
  781 VGLGGVSPAA AAKAAKYGAA GLGGVLGARP FPGGGVAARP GFGLSPIYPG GGAGGLGVGG 840
  841 KPPKPYGGAL GALGYQGGGC FGKSCGRKRK