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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: DMBT1_PIG
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTSAVILEI CLLLSQVLTT VSSTTQTEST TEDRTQITET AFWETQTINS VSESDLPGTH  60
   61 ASSFHTEEPL TTIAAEGTEW DLALRLVNGG DRCQGRVEIL YQGSWGTVCD DSWDTNDANV 120
  121 VCRQLGCGWA VSAPGSARFG QGLGPILLDD LRCSGHETYL WSCPHSGWKT HNCGHQEDAG 180
  181 VICSGAQRSS TVIPDWWYTT TRSQTAHIRS TIPAWWHPTT TTAARTEWDL ALRLVNGGDR 240
  241 CQGRVEVLYQ GSWGTVCDDS WDTNDANVVC RQLGCGWAVS APGSARFGQG SGPILLDDLR 300
  301 CSGHETYLWS CPHSGWNTHN CGHHEDAGVI CSDAQRSSTV IPDWWYTTTP SQTAHIRSTI 360
  361 PAWWHPTTTT AARTEWDLAL RLVNGGDRCQ GRVEVLYQGS WGTVCDDSWD TNDANVVCRQ 420
  421 LGCGWAVSAP GSARFGQGSG PILLDDLRCS GHETYLWSCP HSGWNTHNCG HHEDAGVICS 480
  481 DAQRSSTVIP DWWYTTTPSQ TWWHPTTTTA ASPSSPCGGF LTSASGTFSS PSYPGLYPNN 540
  541 ANCVWEIEVN SGYRINLGFN NLQLEVHINC IYDYIEIFDE SPGSNTSLGK ICNHTSQIFT 600
  601 SSYNRMTVRF RSDGSVQKPG FSAWYNSFPR DASLRLVNSN SSYPSCAGRV EIYQGGRWGT 660
  661 VCDDGWDIQD AQVVCRQLGC GNAVSAPGNA YFGPGSGPIT LDDVACSGTE STLWQCRNRG 720
  721 WFSHNCGHSE DAGVICSVPA FTTTPPATNY SCGGFLSQAA GGFNSPFYPG NYPNNANCVW 780
  781 DIEVQNNYRV TVVFRDVQLE SGCNFDYIEV FDGPYRSSPL LARVCNGASG SFTSSSNFMS 840
  841 IRFISDVSVT RAGFRANYYS SPSSGSTRLH CLQNHMQASV STSYLQSLGY SARDLVIPGW 900
  901 EWSYQCQPQI TSTQVTFTIP YSSCGTIQRV DNDTITYSNS LRAAVSSGII KRKKDLNMYV 960
  961 SCRMLQNTWV NTVYIANDTL EVQNVQYGNF DVNISFFTSS SFLYPVRSSP YYVDLNQNLY1020
 1021 LQAELLHANA SLALFVDTCV ASPYPNDFTT LTYDLIRSGC VKDETYQSYS QPSPRIVRFK1080
 1081 FSSFHFLSRF PSVYLQCKMV VCRAFDSSSR CRRGCVVRSK RDVGSYQEKV DVVLGPIQLQ1140
 1141 TLHAEKRSLD QPAVDLEEKA SAQGSYDGAA ISAGIFLVVV LAVAAFTLGR RGRAADGQPL1200
 1201 ISKT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle