YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBD_CLOTE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLIDIIVAV LLDFAIGDPY WFPHPVIYIG KLISYLEEVG RKHFKSNKGL KTLGGLVVLT  60
   61 IAITSFGIPF LILWMVKDSF WIFHFLNIIL IWTTLAAKSL KVEGKRVYYA LKNEDIQEAR 120
  121 EKLSYIVGRD TRNLTEEEII RADIETIMEN TADGVIAPLF YAMIGGAPFA MMYKGINTMD 180
  181 SMLGYMNDKY IHLGFFPAKV DDVFNFIPAR ISGVLICLSA PIVKGNIIRS FKVMLRDRKN 240
  241 HKSPNCAYPE GAGAGVMGIQ LGGTNVYFGK AVYKPTIGDR IKDLHHELIN DSVKLMYASE 300
  301 TLMVIIYALT VTSYNLR

Type	Start	End	Confidence
Cytoplasmic	1	51	0.85
Transmembrane Helix	52	73	0.95
Non-Cytoplasmic	74	79	0.86
Transmembrane Helix	80	100	0.89
Cytoplasmic	101	153	0.97
Transmembrane Helix	154	176	0.86
Non-Cytoplasmic	177	205	0.96
Transmembrane Helix	206	228	0.88
Cytoplasmic	229	317	0.64