YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLD1_RAT
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANAGLQLLG FILASLGWIG SIVSTALPQW KIYSYAGDNI VTAQAIYEGL WMSCVSQSTG  60
   61 QIQCKVFDSL LNLNSTLQAT RALMVIGILL GLIAIFVSTI GMKCMRCLED DEVQKMWMAV 120
  121 IGGIIFVISG LATLVATAWY GNRIVQEFYD PMTPVNARYE FGQALFTGWA AASLCLLGGA 180
  181 LLSCSCPRKT TSYPTPRPYP KPTPSSGKDY V

Type	Start	End	Confidence
Cytoplasmic	1	7	0.82
Transmembrane Helix	8	27	0.88
Non-Cytoplasmic	28	78	0.95
Transmembrane Helix	79	101	0.89
Cytoplasmic	102	116	0.88
Transmembrane Helix	117	140	0.91
Non-Cytoplasmic	141	163	0.92
Transmembrane Helix	164	184	0.91
Cytoplasmic	185	211	0.94