YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C1QC_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVGTSCQPQ HGLYLLLLLL ALPLRSQANA GCYGIPGMPG LPGTPGKDGH DGLQGPKGEP  60
   61 GIPAIPGTQG PKGQKGEPGM PGHRGKNGPM GTSGSPGDPG PRGPPGEPGE EGRYKQKHQS 120
  121 VFTVTRQTAQ YPAANGLVKF NSAITNPQGD YNTNTGKFTC KVPGLYYFVH HTSQTANLCV 180
  181 QLLLNNAKVT SFCDHMSNSK QVSSGGVLLR LQRGDEVWLA VNDYNGMVGT EGSDSVFSGF 240
  241 LLFPD

Type	Start	End	Confidence
Signal Peptide	1	30	0.98
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	245	0.99