YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARAE3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLCNILDDQ SFSFDFDNSG MEYLEPKRKS NVMGKIILVV SLTALCIFML KHAPSFTSPT  60
   61 AFSRSEEGVT HVLVTGGAGY IGSHAALRLL KDSYRVTIVD NLSRGNLGAV KVLQGLFPEP 120
  121 GRLQFIYADL GDAKAVDKIF SENAFDAVMH FAAVAYVGES TLDPLKYYHN ITSNTLVVLE 180
  181 AVARHKVKKL IYSSTCATYG EPDKMPIVEV TPQVPINPYG KAKKMAEDMI LDFSKNSDMA 240
  241 VMILRYFNVI GSDPEGRLGE APKPELREHG RISGACFDAA RGVIPGLQVK GTDYKTGDGT 300
  301 CVRDYIDVTD LVDAHVKALE KAKPRNVGIY NVGTGKGRSV KEFVEACKKA TGVDIKVDFL 360
  361 PRRPGDYAEV YSDPAKILRD LNWSARYTNL QESLEVAWKW QKTHPHGYAS S

Type	Start	End	Confidence
Cytoplasmic	1	31	0.96
Transmembrane Helix	32	53	0.87
Non-Cytoplasmic	54	411	0.85