YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG10_MAGGR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.62
Transmembrane Helix	12	29	0.77
Cytoplasmic	30	43	0.84
Transmembrane Helix	44	64	0.95
Non-Cytoplasmic	65	141	0.88
Transmembrane Helix	142	160	0.69
Cytoplasmic	161	178	0.81
Transmembrane Helix	179	202	0.84
Non-Cytoplasmic	203	234	0.79
Transmembrane Helix	235	258	0.61
Cytoplasmic	259	283	0.54
Transmembrane Helix	284	298	0.34
Non-Cytoplasmic	299	307	0.55
Transmembrane Helix	308	328	0.73
Cytoplasmic	329	334	0.78
Transmembrane Helix	335	357	0.88
Non-Cytoplasmic	358	372	0.77
Transmembrane Helix	373	393	0.90
Cytoplasmic	394	552	0.67
Transmembrane Helix	553	577	0.73
Non-Cytoplasmic	578	616	0.54
Transmembrane Helix	617	642	0.69
Cytoplasmic	643	660	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLFEMLPVS RLVHILVIYA ASFAITDVME DSFIQSRRLL LNRFIYRTGL FLVIIAACIW  60
   61 LAIVNTKVPE PYLDEVFHIP QAEKYLQGRW VEWDDKITTP PGLYLVSYVL VKARTWLSAS 120
  121 AAAVNPRYSQ DGVTAASLLR ESNVYAVMAI AALVLRCRRF IETRHAPTNA KGPHFDSMYS 180
  181 IHTTVNITLF PVIFFFSGLY YTDLWSTATV LWAYENHLKR LTEQTTFWND INTVILGVTA 240
  241 LFMRQTNVFW VVVYFGGLES IHAIKKGAGS SSSKAVKAAN IRDLAHALET YWALYAAGNI 300
  301 HDPPLSAAST YDVVWLVLSV AIAAVHNLPR VLRQVWPHIS ILGLFAGFVA WNGGVVLGDK 360
  361 SNHVATLHLA QMLYIWPLIA FFSAPLMLRC LVSTALYLRK LLQGHSAQPQ KERSTKSSQK 420
  421 DWTLTCIGFI QQHTSSGLPF PLWYVSAAVA TVIVHKSTII HPFTLADNRH YMFYVFRYSI 480
  481 LRRPEVRYLL VPFYVVCHRL CWHLLGGSST QDGQRISFIQ APGVETVSSA PPKDTIKLKE 540
  541 EGRPEDGGES LSTGVLWLSA TALSLITAPL VEPRYFIVPW VMWRIMVPAW RVQEPRSGEK 600
  601 GLLTRLRSWT QGLDLRLVLE TLWFVAINLG TMYMFICRPY HWKDVDGKLM DEGRLQRFMW 660
  661