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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|56206872, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPVARPLSL LLTFFLCACA ETPPRFTRTP VDQTGVSGGV ASFICQATGD PRPKIVWNKK  60
   61 GKKVSNQRFE VIEFDDGSGS VLRIQPLRTP RDEAIYECVA SNNVGEISVS TRLTVLREDQ 120
  121 IPRGFPTIDM GPQLKVVERT RTATMLCAAS GNPDPEITWF KDFLPVDTSN NNGRIKQLRS 180
  181 GALQIEQSEE SDQGKYECVA TNSAGTRYSA PANLYVRELR EVRRVPPRFS IPPTNHEIMP 240
  241 GGSVNITCVA VGSPMPYVKW MLGAEDLTPE DDMPIGRNVL ELNDVRQSAN YTCVAMSTLG 300
  301 VIEAIAQITV KALPKPPGTP VVTESTATSI TLTWDSGNPE PVSYYIIQHK PKNSEEPYKE 360
  361 IDGIATTRYS VAGLSPYSDY EFRVVAVNNI GRGPASEPVL TQTSEQAPSS APRDVQARML 420
  421 SSTTILVQWK EPEEPNGQIQ GYRVYYTMDP TQHVNNWMKH NVADSQITTI GNLVPQKTYS 480
  481 VKVLAFTSIG DGPLSSDIQV ITQTGVPGQP LNFKAEPESE TSILLSWTPP RSDTIASYEL 540
  541 VYRDGDQGEE QRITIEPGTS YRLQGLKPNS LYYFRLSARS PQGLGASTAE ISARTMQSKP 600
  601 SAPPQDISCT SPSSTSILVS WQPPPVEKQN GIITEYSLKY AAVDGEDFKP HEILGIPSDT 660
  661 TKYLLEQLEK WTEYRITVTA HTDVGPGPES LSVLIRTDED VPSGPPRKVE VEAVNATAVK 720
  721 VSWRSPVPNK QHGQIRGYQV HYVKMENGEP KGQPMLKDVM LADAQWEFDD TTEHDMIISG 780
  781 LQPETSYSLT VTAYTTKGDG ARSKPKLVST TGAVPGKPRL VINHTQMNTA LIQWHPPVDT 840
  841 FGPLQGYRLK FGRKDMEPLT TLEFSEKEDH FTATDIHKGA SYVFRLSARN KVGFGEEMVK 900
  901 EISVPEEIPT GFPQNLHSEG TTSTSVQLSW QPPVLAERNG VITKYTLLYR DINVPLLPME 960
  961 HLIVPADTSM TLTGLKSDTT YDVKVRAHTS KGPGPYSPSV QFRTLPVDQV FAKNFHVKAV1020
 1021 MKTSVLLSWE IPENYNSAMP FKILYDDGKM VEEVDGRATQ KLIVNLKPEK SYSFVLTNRG1080
 1081 NSAGGLQHRV TAKTAPDVLR TKPAFIGKTN LDGMITVQLP DVPANENIKG YYIIIVPLKK1140
 1141 SRGKFIKPWE SPDEMELDEL LKEISRKRRS IRYGREVELK PYIAAHFDVL PTEFTLGDDK1200
 1201 HYGGFTNKQL QSGQEYVFFV LAVMDHAESK MYATSPYSDP VVSMDLDPQP ITDEEEGLIW1260
 1261 VVGPVLAVVF IICIVIAILL YKRKRAESES RKSSLPNSKE VPSHHPTDPV ELRRLNFQTP1320
 1321 GMASHPPIPI LELADHIERL KANDNLKFSQ EYESIDPGQQ FTWEHSNLEV NKPKNRYANV1380
 1381 IAYDHSRVLL SAIEGIPGSD YVNANYIDGY RKQNAYIATQ GSLPETFGDF WRMIWEQRSA1440
 1441 TVVMMTKLEE RSRVKCDQYW PSRGTETHGL VQVTLLDTVE LATYCVRTFA LYKNGSSEKR1500
 1501 EVRQFQFTAW PDHGVPEHPT PFLAFLRRVK TCNPPDAGPM VVHCSAGVGR TGCFIVIDAM1560
 1561 LERIKHEKTV DIYGHVTLMR AQRNYMVQTE DQYIFIHDAL LEAVTCGNTE VPARNLYAYI1620
 1621 QKLTQIETGE NVTGMELEFK RLASSKAHTS RFISANLPCN KFKNRLVNIM PYESTRVCLQ1680
 1681 PIRGVEGSDY INASFLDGYR QQKAYIATQG PLAETTEDFW RMLWEHNSTI VVMLTKLREM1740
 1741 GREKCHQYWP AERSARYQYF VVDPMAEYNM PQYILREFKV TDARDGQSRT VRQFQFTDWP1800
 1801 EQGVPKSGEG FIDFIGQVHK TKEQFGQDGP ISVHCSAGVG RTGVFITLSI VLERMRYEGV1860
 1861 VDIFQTVKML RTQRPAMVQT EDQYQFCYRA ALEYLGSFDH YAT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle